View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17446_high_3 (Length: 795)
Name: NF17446_high_3
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 782
Target Start/End: Original strand, 38321685 - 38322443
Alignment:
| Q |
19 |
aagtaggaaccattgatgggtattatatttagtgacttagtttaatactgctttaatttcaacagtttttgtcgaaattttaggttgagcagctagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38321685 |
aagtaggaaccattgatgggtattatatttagtgacttagcttaatactgctttaatttcaacagtttttgtcaaaatttcaggttgagcagctagtgaa |
38321784 |
T |
|
| Q |
119 |
agatgaaagcttggcagctgcatatgaattgttagaccagttctgtgaatttatcctaactcaactctcctatatccgaaggcacaagtaaagattgctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38321785 |
agatgaaagcttggcagctgcatatgaattgttagaccagttctgtgaatttatcctaactcaactctcctatatccgaaggcacaagtaaagattgctt |
38321884 |
T |
|
| Q |
219 |
cctacctatctaatctatgg-catgtttggaacaacgatgagtttgacacagtagcaccatgattttgttaaagccctaaacta-----tagtttttgtg |
312 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38321885 |
cctacctatctaatctatcgacatgtttggaacaatgatgagtttgacacagtagcaccatgattttgttaaagccctaaactaaagtatagtttttgtg |
38321984 |
T |
|
| Q |
313 |
tcaaactcaccgtcaatccaaacatgaactatatcttattctaaattaaacacagcttgtaaacgtctcaccctcgccaaaatttctgatgtttcaaaac |
412 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
38321985 |
tcaaactcaccgtcgatccaaacatgaactatatcttattctaaattaaatacatcttttaaacttctcaccctcgccaaaatttctgttggttcaaaac |
38322084 |
T |
|
| Q |
413 |
tttccataaatcagggactgtccaaatggtataaaagaagcaatttctagtcttatatttgcatctgcaaggtgtggggatattcccgagctctttgtaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38322085 |
tttccataaatcagggactgtccaaatgatataaaagaagcaatttctagtcttatatttgcatctgcaagatgtggggatattcccgagctctttgtaa |
38322184 |
T |
|
| Q |
513 |
tcaggatactgtttggaaaacgttatggtgagcaatttgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacatttttattc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38322185 |
tcaggatactgtttggaaaacgttatggtgagcaatttgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacatttttgttc |
38322284 |
T |
|
| Q |
613 |
gtttcagtgaagggctatgtagtaccaacagttttgatccaaaacgtgccctatatttgacatatgtcagtgtctgacaccgacacaatcctgacttatg |
712 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38322285 |
gtttcagtgaagggctatgtagcaccgacagttttgatccaaaacgtgccctatatttgacatatgtcagtgtctgacacc-----------gacttatg |
38322373 |
T |
|
| Q |
713 |
cggttatatttaatcacttttactttcttaaactattacaaatgttaatgtccgtgtttgcgtctgtgct |
782 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38322374 |
tggttatatttaatcacttttactttcttaaactattacaaatgttaatgtccgtgtttgcgtctgtgct |
38322443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 16292936 - 16292863
Alignment:
| Q |
135 |
gctgcatatgaattgttagaccagttctgtgaatttatcctaactcaactctcctatatccgaaggcacaagta |
208 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||| |||||||| |||||| ||| ||||||||| |
|
|
| T |
16292936 |
gctgcatatgaaatgttagatcagttctttgaatttatccttcaccaactctcatatatcagaaagcacaagta |
16292863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University