View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17446_high_5 (Length: 647)

Name: NF17446_high_5
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17446_high_5
NF17446_high_5
[»] chr3 (12 HSPs)
chr3 (319-549)||(51241528-51241759)
chr3 (4-227)||(13700559-13700779)
chr3 (14-266)||(7935441-7935688)
chr3 (28-266)||(47748675-47748909)
chr3 (100-266)||(21399966-21400129)
chr3 (546-633)||(51242690-51242780)
chr3 (94-149)||(14306849-14306904)
chr3 (107-216)||(34829009-34829115)
chr3 (94-199)||(46249318-46249420)
chr3 (271-314)||(52204361-52204404)
chr3 (28-92)||(21398460-21398522)
chr3 (284-341)||(32834811-32834868)
[»] chr2 (7 HSPs)
chr2 (5-266)||(1159341-1159599)
chr2 (179-262)||(38927559-38927642)
chr2 (94-199)||(6822991-6823093)
chr2 (275-349)||(38221855-38221929)
chr2 (271-326)||(26352423-26352478)
chr2 (273-323)||(11562960-11563010)
chr2 (273-364)||(42794981-42795073)
[»] chr7 (6 HSPs)
chr7 (5-266)||(27096630-27096888)
chr7 (5-266)||(27181415-27181673)
chr7 (73-199)||(8723584-8723708)
chr7 (94-149)||(27724612-27724667)
chr7 (279-349)||(48152837-48152907)
chr7 (273-349)||(25311300-25311376)
[»] chr4 (7 HSPs)
chr4 (5-263)||(52813975-52814230)
chr4 (18-266)||(41879434-41879678)
chr4 (276-349)||(38948704-38948777)
chr4 (273-349)||(2295182-2295258)
chr4 (107-149)||(9690012-9690054)
chr4 (272-326)||(43770875-43770929)
chr4 (268-313)||(45773856-45773901)
[»] chr1 (5 HSPs)
chr1 (5-263)||(5287487-5287742)
chr1 (28-266)||(40563951-40564184)
chr1 (275-349)||(11767887-11767961)
chr1 (273-367)||(40693718-40693813)
chr1 (273-348)||(17116056-17116131)
[»] chr5 (10 HSPs)
chr5 (5-182)||(374769-374943)
chr5 (99-215)||(379495-379608)
chr5 (74-192)||(35378622-35378738)
chr5 (273-349)||(29231317-29231393)
chr5 (278-341)||(8229146-8229209)
chr5 (94-149)||(14055147-14055202)
chr5 (84-189)||(13735359-13735463)
chr5 (271-360)||(32076679-32076769)
chr5 (269-314)||(19100268-19100313)
chr5 (100-149)||(26904627-26904676)
[»] scaffold0189 (1 HSPs)
scaffold0189 (30-263)||(5603-5831)
[»] chr6 (5 HSPs)
chr6 (14-199)||(14497638-14497819)
chr6 (271-333)||(8485766-8485828)
chr6 (271-333)||(12283931-12283993)
chr6 (268-349)||(12312257-12312338)
chr6 (273-317)||(2032596-2032640)
[»] chr8 (3 HSPs)
chr8 (115-266)||(12247938-12248086)
chr8 (273-349)||(11789613-11789689)
chr8 (273-349)||(24728769-24728845)
[»] scaffold0565 (1 HSPs)
scaffold0565 (273-341)||(7718-7786)
[»] scaffold0321 (1 HSPs)
scaffold0321 (95-146)||(17685-17736)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 319 - 549
Target Start/End: Original strand, 51241528 - 51241759
Alignment:
Q  319 cgatacggacacgtcaccgttttagagtatcgggtttcatagctattaaccgttttaatatttagcatcacaagccattggaaacaacgaaaaattgtaa 418  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51241528 cgatacgggcacgtcaccgttttagagtatcgggtttgatagctattaactgttttaatatttagcatcacaagccatcggaaacaacgaaaaattgtaa 51241627  T
Q  419 ccctttggagcagtagccacaaaca-ttcacatatcacattcacagctgttcatgccgtcatatacaattaatccactttctagtttgtcttttatttac 517  Q
    ||||||||||||||||||||||||| ||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51241628 ccctttggagcagtagccacaaacatttcacatatcacattctgagctgtttatgccgttatatacaattaatccactttctagtttgtcttttatttac 51241727  T
Q  518 acaaatgcatacacactttgtagtatgatagt 549  Q
    ||||||||||||||||||||||||||||||||    
T  51241728 acaaatgcatacacactttgtagtatgatagt 51241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 13700779 - 13700559
Alignment:
Q  4 aataacttcagcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcag 103  Q
    ||||||| | |||||| |||| |||||||||||||||||||||||| ||||||| |  ||||||||| ||||||||||||||||||||||| ||||||||    
T  13700779 aataactacggcgatgaaaacactttagtacaaggtgtactaaatgatccaacctgacaaaaacaaactgtcacaaagtataattacaagagaaagtcag 13700680  T
Q  104 tcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatt 203  Q
    || ||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| |||||||  ||||||||||||||||  ||||| |||    
T  13700679 tcgatacccaaacaatataaagggttcgaccaccaactttgag---aaacgtacacaaaagtgattttgttaactttaagccaccacaagaaatgaaatt 13700583  T
Q  204 aaactttatctaccaactgctcaa 227  Q
      |||||||||| || ||||||||    
T  13700582 ttactttatctaacagctgctcaa 13700559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 7935441 - 7935688
Alignment:
Q  14 gcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcagtcaataccca 113  Q
    ||||||||||| | | |||||||||||||||||| | |||||||||| |||  ||||||||||||||||||||||||||  ||||||||||| |||||||    
T  7935441 gcgatggaaactcctcagtacaaggtgtactaaaggttccaacccggcaaa--caaattgtcacaaagtataattacaaataaaagtcagtcgataccca 7935538  T
Q  114 aacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatc 213  Q
     |||||| |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||    
T  7935539 gacaataaaaagggttcgactaccaactttgag---aaccgtacacaaaagtggttttgttggctttaagccaccacaaagaatgaaattttactttatc 7935635  T
Q  214 taccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    || || ||| ||||| |  ||| | |||||||||||||   ||||||||||||    
T  7935636 taacagctgttcaataggtgtttcagtgtttttgaacagcctgttgtttcgtt 7935688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 47748675 - 47748909
Alignment:
Q  28 ttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaag-tcagtcaatacccaaacaatataaagg 126  Q
    ||||||||||||||||| || | |||||||| | |||  ||||| |||| ||||||||||||||| | |||| |||||  | ||||||||||| || |||    
T  47748675 ttagtacaaggtgtactcaaggatccaacccagcaaa--caaatagtcagaaagtataattacaaaataaaggtcagttgaaacccaaacaatgtagagg 47748772  T
Q  127 gttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatctaccaactgctca 226  Q
    |||||||||||||||||||||||   |||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||| ||  |  || |||    
T  47748773 gttcgaccaccaactttgagaac---cgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatttaatagttgttca 47748869  T
Q  227 attgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    || |  ||| | ||||||||||||||| |||| |||||||    
T  47748870 ataggtgtttcagtgtttttgaacaatctgttatttcgtt 47748909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 100 - 266
Target Start/End: Original strand, 21399966 - 21400129
Alignment:
Q  100 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatga 199  Q
    |||||| | ||||||||||| || ||||||||||||||||||||||||||   |||||||||||||||| || |||||||||||||||||||||||||||    
T  21399966 tcagtcgacacccaaacaatgtagagggttcgaccaccaactttgagaac---cgtacacaaaagtggtattattggctttaagccaccacaacgaatga 21400062  T
Q  200 gattaaactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
     ||| |||||||||||  | ||||||||| |  ||| | ||||||||||| | | ||||||||||||    
T  21400063 aatttaactttatctaatagctgctcaataggtgtttcagtgtttttgaatagtctgttgtttcgtt 21400129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 546 - 633
Target Start/End: Original strand, 51242690 - 51242780
Alignment:
Q  546 tagtatctactatctagtctagattatacacctaggaagtgaaactcta---gggaatctcattccttttaaattaatcttatgagtttca 633  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||||||||||||||| |||||||||||    
T  51242690 tagtatctactatctagtctagattatacacctataaagtgaaactctaatggggaatctcattccttttaaattaatcctatgagtttca 51242780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 14306849 - 14306904
Alignment:
Q  94 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaac 149  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||| || |||||||    
T  14306849 aaaaggtcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaac 14306904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 34829009 - 34829115
Alignment:
Q  107 atacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaa 206  Q
    |||| ||||||  ||||||||||||||||||| |||||||   || |||||| ||||||||  || || |||||||||||||| || || ||| ||| ||    
T  34829009 atactcaaacataataaagggttcgaccaccatctttgag---aatcgtacataaaagtggccttattagctttaagccaccaaaaggagtgaaatttaa 34829105  T
Q  207 ctttatctac 216  Q
    |||| |||||    
T  34829106 ctttttctac 34829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 46249420 - 46249318
Alignment:
Q  94 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaac 193  Q
    |||| ||||||| ||||||||||||  |||||||| ||||||||| ||||| |   |||||||||||||| |||| || ||  |||| | |||||| |||    
T  46249420 aaaaggtcagtcgatacccaaacaaagtaaagggtccgaccaccatctttggg---aaccgtacacaaaattggtgttattaacttttaaccaccataac 46249324  T
Q  194 gaatga 199  Q
    ||||||    
T  46249323 gaatga 46249318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 52204361 - 52204404
Alignment:
Q  271 ggtacgtatccgcgagtattcatgaagtatcgatatccgatacg 314  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  52204361 ggtacgtatccgcgagtatccatgaagtatcggtattcgatacg 52204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 21398460 - 21398522
Alignment:
Q  28 ttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaa 92  Q
    |||||||||||||||||||| | ||||| |||||  |||||||  |||| |||||||||||||||    
T  21398460 ttagtacaaggtgtactaaaggatccaatccggt--aaacaaacagtcataaagtataattacaa 21398522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 32834868 - 32834811
Alignment:
Q  284 gagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgtttt 341  Q
    |||||||| || ||||||| ||||||||||||||| |||||| | ||||| |||||||    
T  32834868 gagtattcgtggagtatcggtatccgatacgtatctgatacgcatacgtctccgtttt 32834811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 1159599 - 1159341
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcagt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||    
T  1159599 ataacttcagcgatggaaacgctttagtacaaggtgtactaaatgttccaacccggtaaaaacaaactgtcacaaagtataattataagaaaaagtcggt 1159500  T
Q  105 caatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatta 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||| || |||||||||||||||||||||||| |||     
T  1159499 caatacccaaacaatataaagggttcgaccaccaattttgag---aaccgtacacaaaagtggtttttttagctttaagccaccacaacgaatgaaattt 1159403  T
Q  205 aactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    ||||||||||| |||||||||||| |  ||||| ||||||||||||||| ||||||||||||    
T  1159402 aactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatttgttgtttcgtt 1159341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 38927642 - 38927559
Alignment:
Q  179 ttaagccaccacaacgaatgagattaaactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgttt 262  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||| |  ||||| ||||||||||||||| ||||||||    
T  38927642 ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatctgttgttt 38927559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6822991 - 6823093
Alignment:
Q  94 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaac 193  Q
    |||| |||| || ||||||||||||  |||||||||||||||||| |||||||   |||||||||||||| |||| || || ||||| | |||||| |||    
T  6822991 aaaaggtcaatcgatacccaaacaaagtaaagggttcgaccaccatctttgag---aaccgtacacaaaattggtgttattagcttttaaccaccataac 6823087  T
Q  194 gaatga 199  Q
    ||||||    
T  6823088 gaatga 6823093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 349
Target Start/End: Original strand, 38221855 - 38221929
Alignment:
Q  275 cgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||| | || ||||||| ||||| |||||||||||||||||  ||||| ||||||| |||||||    
T  38221855 cgtatccgcgagtatccgtggagtatcggtatccaatacgtatccgatacgggtacgtctccgttttggagtatc 38221929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 26352478 - 26352423
Alignment:
Q  271 ggtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacgg 326  Q
    |||||||||||||||||||   |||||||||| |||| |||||||||| |||||||    
T  26352478 ggtacgtatccgcgagtatctgtgaagtatcggtatctgatacgtatctgatacgg 26352423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 11562960 - 11563010
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgata 323  Q
    ||||||||||||||||| | |||||||||| |||| |||| ||||||||||    
T  11562960 tacgtatccgcgagtatccgtgaagtatcggtatctgatatgtatccgata 11563010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 364
Target Start/End: Original strand, 42794981 - 42795073
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagta-tcgggtttcatagctat 364  Q
    ||||||||||||||||| | || ||||||| ||| | ||||||||||  || ||  ||||| ||||||| ||||| ||||| |||||||||||    
T  42794981 tacgtatccgcgagtatccgtggagtatcggtattccatacgtatccagtatgggtacgtctccgttttggagtattcgggcttcatagctat 42795073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 27096630 - 27096888
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcagt 104  Q
    |||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  27096630 ataactacggcgatggaaacgctttagtacaaggtgtactaaatgatctaacccagtaaaaacaaactgtcacaaagtataattataagaaaaagtcagt 27096729  T
Q  105 caatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  27096730 caatacccaaacaatataaagggttcgaccaccaactttgag---aaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaattt 27096826  T
Q  205 aactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    ||||||||||| |||||| ||||| |  ||||| |||||||||| |||| ||||||||||||    
T  27096827 aactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgtt 27096888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 27181673 - 27181415
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcagt 104  Q
    |||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  27181673 ataactacggcgatggaaacgctttagtacaaggtgtactaaatgatctaacccagtaaaaacaaactgtcacaaagtataattataagaaaaagtcagt 27181574  T
Q  105 caatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  27181573 caatacccaaacaatataaagggttcgaccaccaactttgag---aaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaattt 27181477  T
Q  205 aactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    ||||||||||| |||||| ||||| |  ||||| |||||||||| |||| ||||||||||||    
T  27181476 aactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgtt 27181415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 8723708 - 8723584
Alignment:
Q  73 gtcacaaagtataattacaagaaaaag-tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggtttt 171  Q
    |||||||||||||||||||| || ||| |||||| ||||| | |||| |||||||||||||||| ||| | |||| ||   |||||||||||||||||||    
T  8723708 gtcacaaagtataattacaaaaacaaggtcagtcgatacctagacaagataaagggttcgaccaacaattctgaggac---cgtacacaaaagtggtttt 8723612  T
Q  172 gttgg-ctttaagccaccacaacgaatga 199  Q
     |||| |||||| ||||||||| ||||||    
T  8723611 attggactttaa-ccaccacaaagaatga 8723584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 27724667 - 27724612
Alignment:
Q  94 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaac 149  Q
    |||||||||||| ||||||||||||  |||||| | ||||||||| ||||||||||    
T  27724667 aaaaagtcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaac 27724612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 48152907 - 48152837
Alignment:
Q  279 tccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||| | || ||||||  ||||| ||||||||||||||| || ||||| ||||||| |||||||    
T  48152907 tccgcgagtatccgtggagtatcagtatccaatacgtatccgatacagatacgtctccgttttggagtatc 48152837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 25311300 - 25311376
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||||||  || ||||||  ||||  ||| |||||||||||||  ||||| ||||||| |||||||    
T  25311300 tacgtatccgcgagtatttgtggagtatcagtatctaatatgtatccgatacgggtacgtctccgttttggagtatc 25311376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 52813975 - 52814230
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaa-tgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| | ||||||||||||||||||||| |||||||||    
T  52813975 ataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaact-gtcacaaagtataattacaaggaaaagtcag 52814073  T
Q  104 tcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  52814074 tcaatacccaaacaatataaagggttcgaccaccaactttgag---aaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaatt 52814170  T
Q  204 aaactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttc 263  Q
      |||||||| |  ||||||||||| |  |||||  |||| ||||||||| |||||||||    
T  52814171 ttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttc 52814230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 41879678 - 41879434
Alignment:
Q  18 tggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaaga-aaaagtcagtcaatacccaaac 116  Q
    ||||||| | |||||||||||||||||||| | ||||||| |  | ||||||  |||||||||||||| |||||||| ||||||||||| ||||| | ||    
T  41879678 tggaaactccttagtacaaggtgtactaaaggatccaaccag--acaaacaacctgtcacaaagtatatttacaagagaaaagtcagtcgatacctagac 41879581  T
Q  117 aatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatctac 216  Q
    ||  ||||||||||||||||||  |||||||||   |||||| |||||||||||| || ||||| |  ||||||||||| ||| ||| |||||||||||     
T  41879580 aaagtaaagggttcgaccaccagttttgagaac---cgtacataaaagtggttttattagcttttaatcaccacaacgagtgaaatttaactttatctaa 41879484  T
Q  217 caactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
     |  |||||||| |  ||| | ||||| ||||||| | ||||||||||||    
T  41879483 gagttgctcaatagatgtttcagtgttattgaacagtctgttgtttcgtt 41879434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 38948704 - 38948777
Alignment:
Q  276 gtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||| |||||| | || ||||||| |||||||||||||||| ||||||| ||||| || |||| |||||||    
T  38948704 gtatccgagagtatccgtggagtatcggtatccgatacgtatccaatacggatacgtctccattttggagtatc 38948777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 2295258 - 2295182
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||||| | || ||||||| ||||||| ||||||||| |||||  ||||| | ||||| |||||||    
T  2295258 tacgtatccgcgagtatccttggagtatcggtatccgacacgtatccggtacgggtacgtctctgtttttgagtatc 2295182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 9690012 - 9690054
Alignment:
Q  107 atacccaaacaatataaagggttcgaccaccaactttgagaac 149  Q
    ||||||||||||  |||||||||||||||||| ||||||||||    
T  9690012 atacccaaacaaagtaaagggttcgaccaccatctttgagaac 9690054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 43770875 - 43770929
Alignment:
Q  272 gtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacgg 326  Q
    |||||||| ||| ||||| || ||||||||||||||||||| ||||| |||||||    
T  43770875 gtacgtattcgcaagtatccacgaagtatcgatatccgatatgtatctgatacgg 43770929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 45773901 - 45773856
Alignment:
Q  268 ataggtacgtatccgcgagtattcatgaagtatcgatatccgatac 313  Q
    |||| ||||||||||| ||||| | |||||||||||||||||||||    
T  45773901 atagatacgtatccgcaagtatccgtgaagtatcgatatccgatac 45773856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 6e-79; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 5287487 - 5287742
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaa-tgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcag 103  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||| |||| | ||||||||||||||||||||| |||||||||    
T  5287487 ataacttcagtgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaagacaact-gtcacaaagtataattacaaggaaaagtcag 5287585  T
Q  104 tcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  5287586 tcaatacccaaacaatataaagggttcgaccaccaactttgag---aaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaatt 5287682  T
Q  204 aaactttatctaccaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttc 263  Q
      |||||||| |  ||||||||||| |  |||||  |||| ||||||||| |||||||||    
T  5287683 ttactttatcgaataactgctcaataggtgttgctatgttgttgaacaatctgttgtttc 5287742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 40564184 - 40563951
Alignment:
Q  28 ttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaag-tcagtcaatacccaaacaatataaagg 126  Q
    |||||||||||||||||||  | |||||||||  | |||||||   |||||| ||||||||| || | |||| ||| || | ||| ||||||| || | |    
T  40564184 ttagtacaaggtgtactaag-gatccaacccg--acaaacaaacaatcacaacgtataattataaaataaaggtcactcgacacctaaacaatgtagatg 40564088  T
Q  127 gttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatctaccaactgctca 226  Q
    ||| |||||||||||||||||||    |||||||||| |||| || ||||||||||||||||||||| ||||  ||| |||||||| ||  |  ||||||    
T  40564087 gtttgaccaccaactttgagaact---gtacacaaaaatggtattattggctttaagccaccacaacaaatggaatttaactttatataatagttgctca 40563991  T
Q  227 attgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    || |  ||| | ||||||||||||| | ||||||||||||    
T  40563990 ataggtgtttcagtgtttttgaacagtttgttgtttcgtt 40563951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 349
Target Start/End: Original strand, 11767887 - 11767961
Alignment:
Q  275 cgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||| | | |||||||| |||||||||||||||| ||||||  ||||| |||||||||||||||    
T  11767887 cgtatccgcgagtatccgtaaagtatcggtatccgatacgtatccaatacgggtacgtctccgttttagagtatc 11767961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 40693813 - 40693718
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc-gggtttcatagctattaa 367  Q
    ||||||||||||||||| | || ||||||| ||||||||||||||||| ||| |  ||||| | |||||| |||||| ||| ||||||| ||||||    
T  40693813 tacgtatccgcgagtatccgtggagtatcggtatccgatacgtatccggtacaggtacgtctctgttttaaagtatctgggcttcatagatattaa 40693718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 17116131 - 17116056
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtat 348  Q
    |||||| |||||||||| | |||||||||| ||||||||||||||| | ||||   ||||| ||||||| ||||||    
T  17116131 tacgtacccgcgagtatccgtgaagtatcggtatccgatacgtatctggtacgtgtacgtctccgttttggagtat 17116056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 7e-57; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 374943 - 374769
Alignment:
Q  5 ataacttcagcgatggaaacgctttagtacaaggtgtactaaa-tgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| | |||| | |||||||||||||| |||||||||    
T  374943 ataacttcagcgatggaaacgctttagtacaaggtgtactaaaatgttccaccccggtaaaaacaact-gtcagagagtataattacaaggaaaagtcag 374845  T
Q  104 tcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaa 182  Q
    || ||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||    
T  374844 tcgatatccaaacaatataaagggttcgaccaccaactttgag---aaccgtacacaaaagtgattttgttggctttaa 374769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 379495 - 379608
Alignment:
Q  99 gtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatg 198  Q
    ||||||| |||||||||||||| ||||||| |||||||||||| ||||    | ||||||||||| | |  || || || ||||||||||| ||||||||    
T  379495 gtcagtcgatacccaaacaatacaaagggtccgaccaccaactctgag---tatcgtacacaaaattagcgttcttagccttaagccaccataacgaatg 379591  T
Q  199 agattaaactttatcta 215  Q
    | ||| |||||| ||||    
T  379592 aaatttaactttctcta 379608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 35378738 - 35378622
Alignment:
Q  74 tcacaaagtataattacaagaaaaag-tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttg 172  Q
    ||||||||||||||||||| || ||| || ||| ||||||| |||| ||||| |||||||||||||| | ||   |  |||||||||||||||| ||||     
T  35378738 tcacaaagtataattacaaaaacaaggtcggtcgatacccagacaagataaacggttcgaccaccaattctg---aataccgtacacaaaagtgatttta 35378642  T
Q  173 ttggctttaagccaccacaa 192  Q
    ||||| || ||||| |||||    
T  35378641 ttggcctttagccatcacaa 35378622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 29231317 - 29231393
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    |||||||| |||| ||| | || ||||||| ||||||||||||||||| ||||| ||| || ||||||| |||||||    
T  29231317 tacgtatctgcgaatatccgtggagtatcggtatccgatacgtatccggtacgggcacatctccgttttggagtatc 29231393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 8229209 - 8229146
Alignment:
Q  278 atccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgtttt 341  Q
    |||||||||||| | || ||||||| |||| ||||||||||||||||||  ||||| |||||||    
T  8229209 atccgcgagtatccgtggagtatcggtatctgatacgtatccgatacgggtacgtctccgtttt 8229146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 14055202 - 14055147
Alignment:
Q  94 aaaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaac 149  Q
    |||| |||| ||||||||||||||| ||||||||| || |||||| ||||||||||    
T  14055202 aaaaggtcaatcaatacccaaacaaaataaagggtccggccaccatctttgagaac 14055147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 13735463 - 13735359
Alignment:
Q  84 taattacaagaaaaa--gtcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggcttta 181  Q
    ||||||||| |||||  |||||||||||||||||||   |||||||||||||||||| || |   || | ||||||||||||||||| || || |||||     
T  13735463 taattacaataaaaaaggtcagtcaatacccaaacacagtaaagggttcgaccaccatctct---aagagccgtacacaaaagtggtattattagctttt 13735367  T
Q  182 agccacca 189  Q
    | ||||||    
T  13735366 aaccacca 13735359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 32076679 - 32076769
Alignment:
Q  271 ggtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatcg-ggtttcatag 360  Q
    ||||||||||||||| ||| | | |||||||| |||||| ||||||||||||||  | | ||| || |||| |||||||| ||||||||||    
T  32076679 ggtacgtatccgcgaatatccttaaagtatcggtatccgttacgtatccgatacatatatgtctccattttggagtatcgaggtttcatag 32076769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 19100268 - 19100313
Alignment:
Q  269 taggtacgtatccgcgagtattcatgaagtatcgatatccgatacg 314  Q
    ||||||| ||||||||||||| | |||||||||| |||||||||||    
T  19100268 taggtacatatccgcgagtatccgtgaagtatcggtatccgatacg 19100313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 26904676 - 26904627
Alignment:
Q  100 tcagtcaatacccaaacaatataaagggttcgaccaccaactttgagaac 149  Q
    |||||| ||||||||||||| |||| ||| |||||||||||| |||||||    
T  26904676 tcagtcgatacccaaacaatgtaaatggtccgaccaccaactctgagaac 26904627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 5603 - 5831
Alignment:
Q  30 agtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaaaaagtcagtcaatacccaaacaatataaagggtt 129  Q
    |||||||||||||||||||| |||||||||| |||  |||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||    
T  5603 agtacaaggtgtactaaatgttccaacccggcaaa--caaactgtcacaaagtataattacaagaataagtcagtcgataccgaaacaatatatagggtt 5700  T
Q  130 cgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatctaccaactgctcaatt 229  Q
    ||| |||||||||||||   |||||||||||||| |||||||| |||||| |||||||| || || |||| |||  ||||||||||  | |||||||||     
T  5701 cgatcaccaactttgag---aaccgtacacaaaaatggttttgatggcttcaagccaccgcaccggatgaaattttactttatctaatagctgctcaata 5797  T
Q  230 gcagttgccgtgtttttgaacaatatgttgtttc 263  Q
    |  ||||| ||||||||||||| | |||||||||    
T  5798 ggtgttgcagtgtttttgaacagtctgttgtttc 5831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 14497638 - 14497819
Alignment:
Q  14 gcgatggaaacgctttagtacaaggtgtactaaatgctccaacccggtaaaaacaaattgtcacaaagtataattacaagaa-aaagtcagtcaataccc 112  Q
    ||||||||||| | | |||||||||||||||| ||| || ||||||  |||||||||| |||||||||||||||||||| || || ||||||||||||||    
T  14497638 gcgatggaaactcctaagtacaaggtgtactagatggtcaaacccg--aaaaacaaatagtcacaaagtataattacaataacaaggtcagtcaataccc 14497735  T
Q  113 aaacaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatga 199  Q
    | |||| ||||||  |   ||||||| || ||||   |||||||||||||||||||||| |||| ||| | ||||||||||||||||    
T  14497736 agacaaaataaagaatctaaccaccatctctgag---aaccgtacacaaaagtggttttattggtttttaaccaccacaacgaatga 14497819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 8485828 - 8485766
Alignment:
Q  271 ggtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtc 333  Q
    ||||||||||   |||||| | ||||||||||||| ||||||||||||| ||||||| |||||    
T  8485828 ggtacgtatctaagagtatccgtgaagtatcgatacccgatacgtatccaatacggatacgtc 8485766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 12283931 - 12283993
Alignment:
Q  271 ggtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtc 333  Q
    ||||| ||||||| | ||| | || ||||||| |||||||||||||||||||||||| |||||    
T  12283931 ggtacatatccgcaaatatccgtggagtatcggtatccgatacgtatccgatacggatacgtc 12283993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 12312257 - 12312338
Alignment:
Q  268 ataggtacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    |||||||||||||||| ||||| | |  ||||||  |||||||||||||||| |||| || ||||| || ||||| ||||||    
T  12312257 ataggtacgtatccgcaagtatccgtagagtatcagtatccgatacgtatccaatacagatacgtctccattttaaagtatc 12312338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 2032596 - 2032640
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtat 317  Q
    ||||||||||||||||| | || ||||||| ||||||||||||||    
T  2032596 tacgtatccgcgagtatccgtggagtatcggtatccgatacgtat 2032640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 115 - 266
Target Start/End: Complemental strand, 12248086 - 12247938
Alignment:
Q  115 acaatataaagggttcgaccaccaactttgagaacaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgagattaaactttatct 214  Q
    |||| |||||||| | |||||||||||||| ||||   || |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  12248086 acaaaataaagggctggaccaccaactttgggaac---cgaacacaaaagtggttttattggctttaagccaccacaacgaatgaaatttaactttatct 12247990  T
Q  215 accaactgctcaattgcagttgccgtgtttttgaacaatatgttgtttcgtt 266  Q
    |  | ||||||||| |  ||| | ||||| ||||||| | ||||||||||||    
T  12247989 aagagctgctcaataggtgtttcagtgttattgaacagtctgttgtttcgtt 12247938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 11789613 - 11789689
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||||| | || ||||||| |||| |||||||||| | ||||| |||||| ||||||| |||||||    
T  11789613 tacgtatccgcgagtatccgtggagtatcggtatctgatacgtatctggtacgggcacgtctccgttttggagtatc 11789689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 24728769 - 24728845
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgttttagagtatc 349  Q
    ||||||||||||||||| | || ||||| | |||| |||||||||||||||||   ||||| ||||||| |||||||    
T  24728769 tacgtatccgcgagtatccgtggagtattggtatctgatacgtatccgatacgagtacgtctccgttttggagtatc 24728845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 7786 - 7718
Alignment:
Q  273 tacgtatccgcgagtattcatgaagtatcgatatccgatacgtatccgatacggacacgtcaccgtttt 341  Q
    ||||||||||||||||| | |  ||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  7786 tacgtatccgcgagtatccgtagagtatcggtatctgatacgtatccgatacggatacgtctccgtttt 7718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 17736 - 17685
Alignment:
Q  95 aaaagtcagtcaatacccaaacaatataaagggttcgaccaccaactttgag 146  Q
    ||||||||||| |||||||||||||  ||||||| |||||||||||| ||||    
T  17736 aaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgag 17685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University