View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_6 (Length: 479)
Name: NF17446_high_6
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 43759814 - 43760021
Alignment:
| Q |
1 |
agaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtgccactgattatgat |
100 |
Q |
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| T |
43759814 |
agaaaatattttaaataaattatttcctttttgtcttgaatttaatttaatgtcatgatacacacatgatgaatgttaatcttgtgccactgattatgat |
43759913 |
T |
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| Q |
101 |
taaaaattaatgacaccgaaattgtctcttttgtttctctttctatgtctatgtgaataatgtgtg--ttttggtttttgttatgacacagaaagcgata |
198 |
Q |
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| T |
43759914 |
taaaaattaatgacaccgaaattgtctct----tttctctttctatgtctatgtgaataatgtgtgttttttggtttttgttatgacacagaaagcgata |
43760009 |
T |
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| Q |
199 |
ggtggggattac |
210 |
Q |
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|||||||||||| |
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| T |
43760010 |
ggtggggattac |
43760021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 246 - 462
Target Start/End: Original strand, 43760060 - 43760291
Alignment:
| Q |
246 |
tgttgttgttttagtatagagtggtggttgttgcagagacagacaagagaagcagtag---------------tagcctagcttgttcttgtttctcggg |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
43760060 |
tgttgttgttttagtatagagtggtggttgttgcagagacagacaagagaagtagtagtagcagtagttgtagtagcctagcttgttcttgtttctcggg |
43760159 |
T |
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| Q |
331 |
tcgcgccgctcgtgtttctttgtcgctcctgcgtgcgtgtatgttgttcttcatcttcttctaattgcacttgttgttttttcaatcccaataacctcaa |
430 |
Q |
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| T |
43760160 |
tcgcgccgctcgtgtttgtttgtcgctcctgcgtgcgtgtgtgttgttcttcatcttcttctaattgcactttttgttttttcaatcccaataacctcaa |
43760259 |
T |
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| Q |
431 |
atctcgaggcttgttttgttttctcaaagggt |
462 |
Q |
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| T |
43760260 |
atctcgaggcttgttttgttttctcaaagggt |
43760291 |
T |
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