View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_high_7 (Length: 479)
Name: NF17446_high_7
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 7096434 - 7096868
Alignment:
| Q |
9 |
ttatactgggctcttgatatctggcaaaatagtggacttaacctgcactcataatcggaatatgggaccgtctcgcataggccggaaacatccattcatt |
108 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
7096434 |
ttatacagggctcttgatatctggcaaaacagtggacttaacctgaactcataatcggaatgtgggaccgtctcgcataggccggcaacatccattcatt |
7096533 |
T |
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| Q |
109 |
ccacaacatatctgagacaaatgaacaaagaatttttattggtaacattaagcaagtgattcacgcagatagaaatttaaattaatttggtgattagaaa |
208 |
Q |
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| T |
7096534 |
ccacaacatatctgagacaaatgaacaaagaatttttattggtaaccttaagcaagtgattcacgcagatagaaatttaaattaat-------------- |
7096619 |
T |
|
| Q |
209 |
ctaatttggtgattagaaactatcatacctcttttcacattcttcaaataaaggttcaactggaataattactgaaatccttatggcattcatcattgaa |
308 |
Q |
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| T |
7096620 |
-----ttggtgattagaaactatcatacctcttttcacattcttcagataaaggttcaactggaataattactgaaatccttatggcattcatcatcgaa |
7096714 |
T |
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| Q |
309 |
caagcatatgctgcaagaacatcgctgaaaaagaatgttacatgtttgctgttatctttattcatggaaaactcaacattctgaaaatttaaagagcatt |
408 |
Q |
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| T |
7096715 |
caagcatatgctgcaagaacatcgctgaaaaagaatgttacatgtttgttgttatctttattcatggaaaactcaacattctgaaaatttaaagagcatt |
7096814 |
T |
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| Q |
409 |
ccagtttgtctatatatagcatggaagtctcgtaacctgtcttggggcgtagct |
462 |
Q |
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| T |
7096815 |
ccagtttgtctatatatagcatggaagtctcgtaacctgtcttggggcgtagct |
7096868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 311 - 462
Target Start/End: Complemental strand, 32492577 - 32492426
Alignment:
| Q |
311 |
agcatatgctgcaagaacatcgctgaaaaagaatgttacatgtttgctgttatc-tttattcatggaaaactcaacattctgaaaatttaaagag-catt |
408 |
Q |
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| T |
32492577 |
agcatatgctgcaagaacatcgctg-aaaaggatgttacatgtttactgttatcttttattcatggacaactcaacattttacaagttaaaagagccatt |
32492479 |
T |
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| Q |
409 |
ccagtttgtctatatatagcatggaagtctcgtaacctgtcttggggcgtagct |
462 |
Q |
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| T |
32492478 |
ccagtttct-tttatatagaatggaagtgttgctacctgtcttgaggcgaagct |
32492426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 7584696 - 7584584
Alignment:
| Q |
16 |
gggctcttgatatctggcaaaatagtggacttaacctgcactcataatcggaatatgggaccgtctcgcataggccggaaacatccattcattccacaac |
115 |
Q |
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| T |
7584696 |
gggctcttgctttctggcaaaacagtggacttaacatgaactcgtaatcggaaagcgggacattctcgcagaagtcagcaacatccattcattccacaac |
7584597 |
T |
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| Q |
116 |
atatctgagacaa |
128 |
Q |
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|||||||| |||| |
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| T |
7584596 |
atatctgacacaa |
7584584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 7584501 - 7584453
Alignment:
| Q |
144 |
ttattggtaacattaagcaagtgattcacgcagatagaaatttaaatta |
192 |
Q |
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| T |
7584501 |
ttattggtaacattaagcaagtgattaatgcagatagaaatttaaatta |
7584453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 145 - 419
Target Start/End: Original strand, 17980763 - 17981025
Alignment:
| Q |
145 |
tattggtaacattaagcaagtgattcacgcagatagaaatttaaattaatttggtgattagaaactaatttggtgattagaaactatcatacctcttttc |
244 |
Q |
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| T |
17980763 |
tattgctaacattaagcaagtgattcatgcagatagaaatttaaatta------------gaaacttatttggcgattagaaactatcataccttttctc |
17980850 |
T |
|
| Q |
245 |
acattcttcaaataaaggttcaactggaataattactgaaatccttatggcattcatcattgaacaagcatatgctgcaagaacatcgctgaaaaagaat |
344 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||| || |||||||||||| ||||| ||||||||| |||||||||||| |||||||| |
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| T |
17980851 |
acattcttcaaataaaggttcaa-tggagtatttactgaaatcattggggcattcatcatgtgacaagtatatgctgcgagaacatcgctg-aaaagaat |
17980948 |
T |
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| Q |
345 |
gttacatgtttgctgttatc--tttattcatggaaaactcaacattctgaaaatttaaagagcattccagtttgtct |
419 |
Q |
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| T |
17980949 |
gttacacatttactgttatctttttattcatggaaaactcaacattttgcaaatctaaagagcattcaagtctgtct |
17981025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 29848819 - 29848885
Alignment:
| Q |
55 |
actcataatcggaatatgggaccgtctcgcataggccggaaacatccattcattccacaacatatct |
121 |
Q |
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| T |
29848819 |
actcataaccggaatgtgggagcttctcgtagaggtcagcaacatccattcattccacaacatatct |
29848885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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