View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_1 (Length: 920)
Name: NF17446_low_1
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 370 - 920
Target Start/End: Complemental strand, 55270403 - 55269853
Alignment:
| Q |
370 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
469 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270403 |
atttcctgtgtgtgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55270304 |
T |
|
| Q |
470 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
565 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270303 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55270208 |
T |
|
| Q |
566 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
665 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270207 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55270108 |
T |
|
| Q |
666 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
761 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270107 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55270012 |
T |
|
| Q |
762 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
861 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55270011 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55269912 |
T |
|
| Q |
862 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacaga |
920 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269911 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacaga |
55269853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 370 - 920
Target Start/End: Complemental strand, 55263539 - 55262989
Alignment:
| Q |
370 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
469 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263539 |
atttcctgtgtgcgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55263440 |
T |
|
| Q |
470 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
565 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263439 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55263344 |
T |
|
| Q |
566 |
tagtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
665 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263343 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55263244 |
T |
|
| Q |
666 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
761 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263243 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55263148 |
T |
|
| Q |
762 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
861 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55263147 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55263048 |
T |
|
| Q |
862 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacaga |
920 |
Q |
| |
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||||||| || | ||| | || ||||||||||||||||||||||||||| ||||| |
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| T |
55263047 |
gctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacaga |
55262989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 55263881 - 55263569
Alignment:
| Q |
18 |
aagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263881 |
aagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattg |
55263782 |
T |
|
| Q |
118 |
gttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttgtgaaggatcctgatggct |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263781 |
gttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcaaggtgggacaactgttattgcctttgtgaaggatcctgatggct |
55263682 |
T |
|
| Q |
218 |
acacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263681 |
acacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaa |
55263582 |
T |
|
| Q |
318 |
ggtaacaatcgaa |
330 |
Q |
| |
|
||||||||||||| |
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| T |
55263581 |
ggtaacaatcgaa |
55263569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 55270745 - 55270433
Alignment:
| Q |
18 |
aagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270745 |
aagacaagagtattctaacttcacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattg |
55270646 |
T |
|
| Q |
118 |
gttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttgtgaaggatcctgatggct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270645 |
gttgagcacattcgtgctaaaggtggaaacatcacaagggaggctggtccagttcaaggtgggacaactgttattgcctttgtgaaggatcctgatggct |
55270546 |
T |
|
| Q |
218 |
acacttttgcacttgtccaaagacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaa |
317 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270545 |
acacttttgcacttgttcaaagacctatagttcacgacccattctgtcaaataagtctccgcgttggtgatttagaacgtgccataaagttttatgaaaa |
55270446 |
T |
|
| Q |
318 |
ggtaacaatcgaa |
330 |
Q |
| |
|
||||||||||||| |
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|
| T |
55270445 |
ggtaacaatcgaa |
55270433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 706 - 825
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
706 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
805 |
Q |
| |
|
||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
|
| Q |
806 |
tgcttatgcacaggttagtt |
825 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 8302632 - 8302517
Alignment:
| Q |
100 |
ttttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttg |
199 |
Q |
| |
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|||||||| |||||||| ||||| || || ||||| |||||||| |||| |||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
8302632 |
ttttaggtctacaaatttgttgaaaacgcccgggctaagggtggaaaagtcactagggagcctggtccagttagtggcgggacaagtgttattgcctttg |
8302533 |
T |
|
| Q |
200 |
tgaaggatcctgatgg |
215 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8302532 |
tggctgatcctgatgg |
8302517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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