View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_10 (Length: 386)
Name: NF17446_low_10
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 8137095 - 8136736
Alignment:
| Q |
9 |
agcacagacaggactagggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcaca |
108 |
Q |
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| T |
8137095 |
agcacagacaggactagggtcaacaaagatcaatgaagccttgaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcaca |
8136996 |
T |
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| Q |
109 |
aattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattg |
208 |
Q |
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| T |
8136995 |
aattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattg |
8136896 |
T |
|
| Q |
209 |
atgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctagattctcataaggatgagagtgttat |
308 |
Q |
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| T |
8136895 |
atgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaagtggctaaattctcataaggatgagagtgttat |
8136796 |
T |
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| Q |
309 |
atatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggtt |
368 |
Q |
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| T |
8136795 |
atatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggtt |
8136736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 51 - 362
Target Start/End: Original strand, 41536627 - 41536941
Alignment:
| Q |
51 |
gaaacaatttaatgaggatatgcttgaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagacttt |
150 |
Q |
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| T |
41536627 |
gaaacaatttaatgatgacttgcttgaagctgaaataggtagttatgggatgctcgtgaattcttttgaagagttagagccaacatatgcaagggattat |
41536726 |
T |
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| Q |
151 |
aaaaagatgaaaaatgacaaagtttggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagagg---taatagtaacaaag |
247 |
Q |
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| T |
41536727 |
aaaaaggtaagaaatgataaagtttggtgtattggtcctgtatcacttagtaacactgattacttggataaggttcaaagaggtaataataataataagg |
41536826 |
T |
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| Q |
248 |
ttttagttcatgaatggaagcacttgaagtggctagattctcataaggatgagagtgttatatatgcatgccttggaagtttatgtaatttaacatcact |
347 |
Q |
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| T |
41536827 |
tttcaaatgatgaatgggagcacttgaagtggcttgattctcataaacaagggagtgttatctacgcatgctttggcagtttatgcaatttaacaccacc |
41536926 |
T |
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| Q |
348 |
acagttgatagagct |
362 |
Q |
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| T |
41536927 |
acagttgatagagct |
41536941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 41517676 - 41517959
Alignment:
| Q |
76 |
gaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagttt |
175 |
Q |
| |
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|||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||| ||||||||| || ||||||||| | |||||||||||||||| |
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| T |
41517676 |
gaagctgaaatgggtacttatggtgtaatcatgaattcttttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagttt |
41517775 |
T |
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| Q |
176 |
ggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaa |
275 |
Q |
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|||| ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| || |||| | || |||||||| |||| ||||| |
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| T |
41517776 |
ggtgcattggtcctgtatcacttagtaacactgattacttggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaa |
41517875 |
T |
|
| Q |
276 |
gtggctagattctcataaggatgagagtgttatatatgcatgccttggaagtttatgtaatttaacatcactacagttgataga |
359 |
Q |
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|||||| |||||||| || | | ||||||| | ||||||||||||||||||||||| ||| ||||| || ||||||||||||| |
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| T |
41517876 |
gtggcttgattctcagaaacaagggagtgttctctatgcatgccttggaagtttatgcaatataacaccattacagttgataga |
41517959 |
T |
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