View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_11 (Length: 383)
Name: NF17446_low_11
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 4004871 - 4005048
Alignment:
| Q |
23 |
agcactattgctcctcttcactatctacttctattgtattctaatttctatgtatgtttgccatgatttggttgaaacatcaaagtgtaatttttgcaaa |
122 |
Q |
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| T |
4004871 |
agcactattgctcctcttcactatctacttctattgcattctcatttctatgtatgtttgccatgatttggttgaaacttcaaagtgtaatttttgcaaa |
4004970 |
T |
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| Q |
123 |
attatgatagctcgttgtacttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
200 |
Q |
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| T |
4004971 |
attatgatagctccttgtgcttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 366
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
233 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
329 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
330 |
nctgcattcaaacatgacctgctcgaattcctacaca |
366 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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