View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_15 (Length: 367)
Name: NF17446_low_15
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 29334708 - 29335058
Alignment:
| Q |
1 |
catagccacaccaaaccttacaaaggcaacccctgatcactaatcagtgagattatttcataaataaaaccatatgatatgcataattgcataacattta |
100 |
Q |
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| T |
29334708 |
catagccacaccaaaccttagaaaggccacccctgatcactaatcagtgagattattccataaataaaaccatatgatatgcataagtgcataacattta |
29334807 |
T |
|
| Q |
101 |
tgatattctagtgttgtttcacttaagccctcttaaacacaaccctaaatgaaggaacttgatcactaagagccaagtgttttttcccatgatcataaac |
200 |
Q |
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| T |
29334808 |
tgatattctagtgttgtttcccttaagccctcttaaacacaaccctaaatgaaggaacttgatcactaagagccaagtgttttttcccatgatcataaac |
29334907 |
T |
|
| Q |
201 |
atataaccctagttccctacacaaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctttctcaatcttaaaccaatta |
300 |
Q |
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| T |
29334908 |
atataaccctagttccctacacaaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctttctcaatcttaaaccaatta |
29335007 |
T |
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| Q |
301 |
aaaattgtgtcaaaccccggattaccttctacacctcctgtagccaaaaac |
351 |
Q |
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| T |
29335008 |
aaaattgtgtcaaaccccggattaccttctacacctcctgtagccaaaaac |
29335058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 29323173 - 29323446
Alignment:
| Q |
34 |
tgatcactaatcagtgagattatttcataaataaaaccatatgatatgcataattgcataacatttatgatattctagtgttgtttcac----ttaagcc |
129 |
Q |
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| T |
29323173 |
tgatcactgattagtgatattattccttcaacaaaaccatatgatatgcataattgcataacatttatgaaactatagtgttatttcacacattcaagcc |
29323272 |
T |
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| Q |
130 |
ctcttaaacacaaccctaaatgaaggaacttgatcactaagagccaagtgttttttcccatgatcataaacatataaccctagttccctacacaaagttt |
229 |
Q |
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| T |
29323273 |
cttttaaatacaaccctaaatgatgggatttgatcactaagagctaagtgcttatttcccttatcatcaacaaacaaccctagttccctacacaaagttt |
29323372 |
T |
|
| Q |
230 |
gacatttacacact---gaaggacaaaatgaaaacacataatctttatcagctttctcaatcttaaaccaatta |
300 |
Q |
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||||||| || || | |||||| || |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29323373 |
gacatttgcaagcttcagcaggacagaaagaaagcacataatctttatcagctttctcaatcttaaaccaatta |
29323446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 29317969 - 29318044
Alignment:
| Q |
223 |
aaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctttctcaatcttaaaccaat |
298 |
Q |
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||||| ||||||| ||| ||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
29317969 |
aaagtctgacattgacaaactaaaggacaaaaagaaagcacataatcattatcagctttctcaatcttaaaccaat |
29318044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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