View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17446_low_16 (Length: 356)
Name: NF17446_low_16
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 7472715 - 7473052
Alignment:
| Q |
12 |
atcaattttctcataattaacttaaagttattgaagtgtgactagtttctaataaatgaaattattacggtcataaatcttcggctgcatacatggggac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7472715 |
atcaattttctcataattaacttaaagttattgaagtgtgactagtttctaataaatgaaattattatggtcataaatcttcggctgcatacatggggac |
7472814 |
T |
|
| Q |
112 |
ttgtcttacgtaggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcacaaccatggag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472815 |
ttgtcttacgtaggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcacaaccatggag |
7472914 |
T |
|
| Q |
212 |
aggaacactatagaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtaggt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7472915 |
aggaacactatagaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtaggt |
7473014 |
T |
|
| Q |
312 |
attgttatggttaaatttgaatatagatacctttgcta |
349 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7473015 |
attgttatgtttaaatttgaatatagatacctttgcta |
7473052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 29598455 - 29598634
Alignment:
| Q |
103 |
catggggacttgtcttacgtaggccgttgaggaatgtgaaataactacagggcatatgtgcgcttcagatgattgtgtcgtctctacatgtctgagcaca |
202 |
Q |
| |
|
|||||||||||| |||| | ||||||| ||||||||||| | ||||| |||| |||||||| | |||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
29598455 |
catggggacttgacttatg-aggccgtcgaggaatgtgatacaactagagggaatatgtgcacatcagctgaatttgtcatctctacatgtctgagcaca |
29598553 |
T |
|
| Q |
203 |
accatggagaggaacactatagaggagaggagattccgggctcttcacaatagatctgttggaatcacagacgagattggtaa |
285 |
Q |
| |
|
|||||| ||||||||||| | ||||||| ||||||| | || ||||||||||| |||| |||| |||| ||||||||||| |
|
|
| T |
29598554 |
accatg--gaggaacactacaaaggagagaagattcccgcttccgcacaatagatccgttgcaatcgcagaggagattggtaa |
29598634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 20451751 - 20451661
Alignment:
| Q |
258 |
ctgttggaatcacagacgagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgct |
348 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||||||| |||| |||||| ||| | |||||||||||||||||||||| ||||| |||| |
|
|
| T |
20451751 |
ctgttggaatcgcagaggagattggcaagctttgtctctttttcacatgtaagtactattatggttaaatttgaatataggtacctctgct |
20451661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 20451798 - 20451752
Alignment:
| Q |
183 |
tctctacatgtctgagcacaaccatggagaggaacactatagaggag |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
20451798 |
tctctacatgtctgagaacaaccatggagaggaacactacagaggag |
20451752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 20451968 - 20451924
Alignment:
| Q |
33 |
ttaaagttattgaagtgtgactagtttctaataaatgaaattatt |
77 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
20451968 |
ttaaggttattgaagtgtggttagcttctaataaatgaaattatt |
20451924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 5368038 - 5367959
Alignment:
| Q |
269 |
acagacgagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgct |
348 |
Q |
| |
|
||||| |||||||| || |||||||||||||| |||||| ||| | |||||||||||||||||||||| ||||| |||| |
|
|
| T |
5368038 |
acagaggagattggcaagctttgtctctctttcacatgtaagtactattatggttaaatttgaatataggtacctctgct |
5367959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 5368076 - 5368029
Alignment:
| Q |
183 |
tctctacatgtctgagcacaaccatggagaggaacactatagaggaga |
230 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
5368076 |
tctctacatgtctgagaacaaccatcgagaggaacactacagaggaga |
5368029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 5368245 - 5368201
Alignment:
| Q |
33 |
ttaaagttattgaagtgtgactagtttctaataaatgaaattatt |
77 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
5368245 |
ttaaggttattgaagtgtggttagcttctaataaatgaaattatt |
5368201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 18924972 - 18924933
Alignment:
| Q |
177 |
gtgtcgtctctacatgtctgagcacaaccatggagaggaa |
216 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18924972 |
gtgtcatctctacatatctgagcacaaccatggagaggaa |
18924933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University