View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_17 (Length: 330)
Name: NF17446_low_17
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 5649370 - 5649062
Alignment:
| Q |
14 |
caaacaaagttaatgatcttattttctaagtaattgaaaatgttgggataaagtagtcaaacaatataagaataaaccttaaaattatcgatgagcaaca |
113 |
Q |
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| T |
5649370 |
caaacaaagttaatgatcttattttccaagtacttgaaaatgttgggacaaagtagtcaaacaatataagaataaaccttaaaattatcgatgagcaaca |
5649271 |
T |
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| Q |
114 |
tctagttcttaaattattcttaaggttaaggccaccttgtgattttgagctccaggcaccttatcatcaaaagggtcaacccaacattcattttatcaac |
213 |
Q |
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| T |
5649270 |
tctagttcttaaattattcttaagg------ccaccttatgattttgagctccctgcaccttatcatcaaaagggtcaacccaacattcattttatcaac |
5649177 |
T |
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| Q |
214 |
catcatcgttatatataggaacatcaaagtgtttgtttatgcaaaacagatgact----tctttcctaaa-------aatgacattgacaactcttgatt |
302 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
5649176 |
catcatcgttatatataggaacatcaaaatgtttgtttatgcaaaacagatgacttgcatctttcctaaagctcttcaatgacattgacaactcttgatt |
5649077 |
T |
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| Q |
303 |
ctctcattcatcttc |
317 |
Q |
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| T |
5649076 |
ctctcattcatcttc |
5649062 |
T |
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