View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_2 (Length: 834)
Name: NF17446_low_2
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 8446589 - 8446166
Alignment:
| Q |
20 |
agcaagtcccatttccttttacccccgcactcatagacgttagatcagcagattaataacgaccagtactatgctttctatgcattttataatatttttc |
119 |
Q |
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| T |
8446589 |
agcaagtcccatttccttttacccccgcactcatagacgttagatcagcagattaataacgaccagtactatgctttctatgcattttataatatttttc |
8446490 |
T |
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| Q |
120 |
actttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgatctaggatgctaaattgttaagctttgattc |
219 |
Q |
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| T |
8446489 |
aatttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgatttaggatgctaaattgttaagctttgattc |
8446390 |
T |
|
| Q |
220 |
taaattttgattatcttgaaaaatgtcacttggcctctagtgatctaggaagctaaattatggcacactagctattcctttggcataaaaactaatataa |
319 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446389 |
taaattttgattatcttgaaaaatgtca-----cctccagtgatctaggaagctaaattatggcacactagctattcctttggcataaaaactaatataa |
8446295 |
T |
|
| Q |
320 |
tataatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacaggg-----------tatgctctattgttcta |
408 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
8446294 |
tctaatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacagggatcttcacctctattctctattgttcta |
8446195 |
T |
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| Q |
409 |
atctttgtccctaactctttccctttgtaa |
438 |
Q |
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| T |
8446194 |
atc-ttgtccctaactctttccctttgtaa |
8446166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 396 - 661
Target Start/End: Complemental strand, 8446141 - 8445876
Alignment:
| Q |
396 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatt-gg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8446141 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatttgg |
8446042 |
T |
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| Q |
495 |
aatactctgtctcccaaaagcgacatcgcccctgcccatgccttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
594 |
Q |
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| T |
8446041 |
aatactctgtctcccaaaagcgacatcacccctgcccatgctttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
8445942 |
T |
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| Q |
595 |
ttatgatagcaacaagtataaattagtaacaaaatcacttaacttggataataataattagaaggcc |
661 |
Q |
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| T |
8445941 |
ttatgatagcaacaagtataaattagtaac-aaatcacttaacttggataataataattagaaggcc |
8445876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 763 - 823
Target Start/End: Complemental strand, 8445874 - 8445814
Alignment:
| Q |
763 |
ttgtgtgtgctttagtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
823 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8445874 |
ttgtgtgtgctttggtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
8445814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 645 - 688
Target Start/End: Complemental strand, 43062010 - 43061967
Alignment:
| Q |
645 |
ataataattagaaggccaaacacaaaacaataccaaaatctaaa |
688 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
43062010 |
ataataattagaagaccaaccacaaaacaataccaaaatctaaa |
43061967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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