View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_20 (Length: 289)
Name: NF17446_low_20
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 385465 - 385744
Alignment:
| Q |
14 |
agataaaagaactatataagagatgaaaatcctttccgatgatgaaacaataacaacttaagagaagatgaaggagtatttagccccaccaagccaaaat |
113 |
Q |
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| T |
385465 |
agataaaagaactatatgagagatgaaaatcctttccgatcatcaaacaataacaacttaagagaagatgaaggagtatttagccccaccaaaccaaaat |
385564 |
T |
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| Q |
114 |
ctcctccatgacccaagtttgcaagcttatcaacacattgatt-------------------ttgatcttatacttttagtgaccatgatccataagata |
194 |
Q |
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| T |
385565 |
ctcctccatgacccaagtttgcaagcttatcaacacattgattaactttccgataaacatgcttgatcttacacttttagtgaccatgatccataagata |
385664 |
T |
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| Q |
195 |
tagcatctattggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccaccattgggagaaagt |
274 |
Q |
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| T |
385665 |
tatcatctattggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccaccatcaggagaaagt |
385744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 28559619 - 28559537
Alignment:
| Q |
62 |
aataacaacttaagagaagatgaaggagtatttagccccaccaagccaaaatctcctccatgacccaagtttgcaagcttatca |
145 |
Q |
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| T |
28559619 |
aataacaacttaagagatcaagatggag-atttagctccaccaagccaaaatctcctccatgacctaagtttgcaagcttatca |
28559537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 28559459 - 28559401
Alignment:
| Q |
204 |
ttggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccacca |
262 |
Q |
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| T |
28559459 |
ttggagaagaggtaaaagattttgattttgagattttcgagacttcaccattcccacca |
28559401 |
T |
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