View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_21 (Length: 282)
Name: NF17446_low_21
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 34714686 - 34714965
Alignment:
| Q |
1 |
tttcaaacttcaaacacatgatcaccaccgtccacctataaaatctcactccaccgacaacatgaaacgacatgaaccaaatctataatcactaatcacg |
100 |
Q |
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| T |
34714686 |
tttcaaacttcaaacacatgatcaccaccgtccacctataaaatctcactccaccgacaacatgaaacgacatgaaccaaatctataatcactaatcacg |
34714785 |
T |
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| Q |
101 |
ccaaaagtaaacaacaaattaaaattgtactagtagtatttattattaaaagctgtaa---------------accgactattccctacaacaacaatgt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34714786 |
ccaaaagtaaacaacaaattaaaattgtactagtagtatttattattaaaagctgtaaatttgtaaaggtacgaccgactattccctacaacaacaatgt |
34714885 |
T |
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| Q |
186 |
ttgtatcatcaccatcattcattttagatcaaaaataaagaaaaatccgaagccataatcaaaataattaaggcttaatt |
265 |
Q |
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|||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34714886 |
ttgtatcatcaccaccattcatctttgatcaaaaataaagaaaaatccgaagccataatcaaaataattaaggcttaatt |
34714965 |
T |
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