View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_23 (Length: 276)
Name: NF17446_low_23
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 38380665 - 38380908
Alignment:
| Q |
18 |
attgacaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaa |
117 |
Q |
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| T |
38380665 |
attgacaactacaaaatccaccctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaa |
38380764 |
T |
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| Q |
118 |
gaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380765 |
gaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaa |
38380864 |
T |
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| Q |
218 |
atcatgttcgttcacaatctcacgtagaaaagatgctgtctgtg |
261 |
Q |
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| T |
38380865 |
atcatgttcgttcacaatctcacgtagaaaagatgctgtttgtg |
38380908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 38389532 - 38389774
Alignment:
| Q |
19 |
ttgacaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaag |
118 |
Q |
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|||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38389532 |
ttgacaactacaaaatccaccttttaaggtcatttgcgcgtgagagttgttgctgcacaaccaaaacagatgcattactattaagatcaggtgaagcaag |
38389631 |
T |
|
| Q |
119 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaa |
218 |
Q |
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| T |
38389632 |
aaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaa |
38389731 |
T |
|
| Q |
219 |
tcatgttcgttcacaatctcacgtagaaaagatgctgtctgtg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38389732 |
tcatgttcgttcacaatctcacgtagaaaagatgctgtttgtg |
38389774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 38398298 - 38398537
Alignment:
| Q |
22 |
acaactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaa |
121 |
Q |
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||||||| ||||| |||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38398298 |
acaactaaaaaattcactttttaacgtcattcacacgtgaaagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaa |
38398397 |
T |
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| Q |
122 |
atcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatca |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398398 |
atcaccaatagcaccgagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatca |
38398497 |
T |
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| Q |
222 |
tgttcgttcacaatctcacgtagaaaagatgctgtctgtg |
261 |
Q |
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| T |
38398498 |
tgttcgttcacaatctcacgtagaaaagatgctgtttgtg |
38398537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 37841588 - 37841359
Alignment:
| Q |
24 |
aactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaaat |
123 |
Q |
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|||||||||| |||| |||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37841588 |
aactacaaaacccaccctttgaggtcattcgaacatgagagttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaat |
37841489 |
T |
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| Q |
124 |
caccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatg |
223 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37841488 |
caccaatagctccaagttctggaaattcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatg |
37841389 |
T |
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| Q |
224 |
ttcgttcacaatctcacgtagaaaagatgc |
253 |
Q |
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||| |||| |||||||||||||||||||| |
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| T |
37841388 |
ttcattcattatctcacgtagaaaagatgc |
37841359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 37845365 - 37845291
Alignment:
| Q |
23 |
caactacaaaatccactctttaaggtcattcgtgcgtgagagttgttgttgcacaaccaaaacagatgcactact |
97 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
37845365 |
caactacaaaatccaccctttaaggtcattcgtgtgtgagagttgttgttgcacaaccaaaacaaatgcactact |
37845291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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