View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_24 (Length: 273)
Name: NF17446_low_24
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 10317060 - 10317279
Alignment:
| Q |
40 |
tgtaaggtagaatctttgacaattgaactctatagaaagcaaaaggtatgatgaagagagaaaggaccacatgagaaagaaactcatataacatcacaaa |
139 |
Q |
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| T |
10317060 |
tgtaaggtagaatctttgacaattgaactctatagaaagcaaaaggtgtgatgaagggagaaaggaccacatgagaaagaaactcatataacatcacaaa |
10317159 |
T |
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| Q |
140 |
agtcactttataaaaaagcataaacaaaattatagaagaacttagataaaaaagaactc--aattttggtcagattttaaattacagttgcagtcgaact |
237 |
Q |
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| T |
10317160 |
agtcactttataaaaaagctgaaacaaaattatagaaaaacttagat-aaaaagaactcataattttggtcggattttaaattacagttgcagtcgaact |
10317258 |
T |
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| Q |
238 |
ggaaattttgtcgtaattctt |
258 |
Q |
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| T |
10317259 |
gaaaattttgtcgtaattctt |
10317279 |
T |
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