View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_25 (Length: 264)
Name: NF17446_low_25
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 42638503 - 42638260
Alignment:
| Q |
2 |
aatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgta |
101 |
Q |
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| T |
42638503 |
aatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgta |
42638404 |
T |
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| Q |
102 |
tcattaaaagttatgatatggcagagtacttgaaactggaattcaagaaggtaaatgaatacctggttgctaaatttgtattagttttctgacgaaagta |
201 |
Q |
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| T |
42638403 |
tcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggtaaatgaatatctggttgccaaatttgcattagtgttttgacgaaagta |
42638304 |
T |
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| Q |
202 |
tgggattgacacaagactttcttcaaattgcaggaaactggatttg |
247 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
42638303 |
tgggact--cacaagactttcttcaaattgcaggaaactggatttg |
42638260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42566448 - 42566552
Alignment:
| Q |
1 |
taatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacactttttcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
42566448 |
taatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatcaccacaatttttcat |
42566547 |
T |
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| Q |
101 |
atcat |
105 |
Q |
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||||| |
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| T |
42566548 |
atcat |
42566552 |
T |
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