View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_26 (Length: 261)
Name: NF17446_low_26
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 54864504 - 54864272
Alignment:
| Q |
13 |
aatattcccttggaaaatatcccaaattaaagtcttgattttgaaaagacccttctaatcaaagaaattcaagtagttttgatcaagaaataaccacc-a |
111 |
Q |
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| T |
54864504 |
aatattcccttggaaaatatcccaaattaaagtcttgattatgaaaagacccttctaatcaaagaatttcaagtagttttgatcaagaaataaccaccaa |
54864405 |
T |
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| Q |
112 |
aatagttaagcaagttgggataattaaccacattaagtttttcagtacacaaaatcttctatgtatgttctgtac---ttctgttctactacttgagtgg |
208 |
Q |
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| T |
54864404 |
aatagttaagcaagttgggataattaaccacattaagtttttcagtacacaaaa---tctatgtatgttctgtactaattctgttctactacttgagtgg |
54864308 |
T |
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| Q |
209 |
ccggccactggaatgtttatatatatgttagaacagaa |
246 |
Q |
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| T |
54864307 |
ccggccactggaatgtt--tatatatgttagaacagaa |
54864272 |
T |
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