View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_30 (Length: 248)
Name: NF17446_low_30
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29334662 - 29334557
Alignment:
| Q |
1 |
tattatatatcttcactttgaaaatataatcagacgtgatgtattgact----tagtggtcaagtgcatgtttttctaactcattgtctttgggtttaaa |
96 |
Q |
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| T |
29334662 |
tattatatatcttgactttgaaaatataatcagacgtgatgtattgactgacttagtggtcaagtgcatgttttcctaactcattgtctttggatttaaa |
29334563 |
T |
|
| Q |
97 |
tctttg |
102 |
Q |
| |
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|||||| |
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| T |
29334562 |
tctttg |
29334557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 6741004 - 6740955
Alignment:
| Q |
37 |
tgatgtattgacttagtggtcaagtgcatgtttttctaactcattgtctt |
86 |
Q |
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| T |
6741004 |
tgatgtattggtctagtggtcaagtgcatgttttcctaactcatagtctt |
6740955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 8138493 - 8138457
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacctc |
203 |
Q |
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| T |
8138493 |
aatgcataatatatgtaaggtctggggttcaaacctc |
8138457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6389085 - 6388997
Alignment:
| Q |
1 |
tattatatatcttcactttgaaaata---taatcagacgtgatgtattgacttagtggtcaagtgcatgtttttctaactcattgtctt |
86 |
Q |
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| T |
6389085 |
tattatatatcttcaatttgaaaatataataatcagatatgatgcattgatctagaggtcaagtgtgtgttttcctaactcattgtctt |
6388997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 40187671 - 40187637
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacc |
201 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
40187671 |
aatgcataatatatgtaaggtctgcggttcaaacc |
40187637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 9783925 - 9783963
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacctcgg |
205 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||| |
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| T |
9783925 |
aatgcataatatatgtaaggtctgaggttcaaacctcgg |
9783963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 37735815 - 37735852
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacctcg |
204 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
37735815 |
aatgcataatatatgtaaggtctgaggttcaaacctcg |
37735852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 43782340 - 43782303
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacctcg |
204 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |
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|
| T |
43782340 |
aatgcataatatatgcaaggtctgcggttcaaacctcg |
43782303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 21245819 - 21245856
Alignment:
| Q |
167 |
aatgcatactatatgtaaggtctgcggttcaaacctcg |
204 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
21245819 |
aatgcataatatatgtaaggtctggggttcaaacctcg |
21245856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 11578215 - 11578179
Alignment:
| Q |
50 |
tagtggtcaagtgcatgtttttctaactcattgtctt |
86 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| |
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| T |
11578215 |
tagtggtcaagtgcatgttttcctaactcatagtctt |
11578179 |
T |
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