View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_4 (Length: 716)
Name: NF17446_low_4
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 25 - 695
Target Start/End: Complemental strand, 36608435 - 36607763
Alignment:
| Q |
25 |
tatatatctgtgaaaatattaatatacatctaaattggtctaaggtgtattcgtgtgtgctcgcatataaaaagacatatcatggaatggcataactaaa |
124 |
Q |
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| T |
36608435 |
tatatatctgtgaaaatattaatatacacctaaattggtctagggtgtattcgtgtgcgctcgcatataaaaagacatgtcatggaatggcataactaaa |
36608336 |
T |
|
| Q |
125 |
gcttcatacacagaaaccatgtgtaaaatcaaacacatgatagattatatgcactgattaattagttatgcaaatcttaatctcaaattgaagtttcaag |
224 |
Q |
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|||| ||| ||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36608335 |
gctttatatacataaaccatgtgtaaaatcaaacacgtaatagattatatgcattgattaattagttatgcaaatcctaatctcaaattgaagtttcaag |
36608236 |
T |
|
| Q |
225 |
gtttaatagcattcaaggaactaaggttcaatacaaaatagaaataaactgacataaaaataaacggtctaaatgtttctaaactatatgttaaattaca |
324 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36608235 |
gtttaatagcattcaaagaactaaggttcaatacaaaatagaaataaactgacataaaaataaacggtctaaatgtttctaaactatctgttaaattaca |
36608136 |
T |
|
| Q |
325 |
cgtgattatcaaaacattagt-gaaaaaacaacagtacaacgaagctcattagatagcatcagtcatgtgacataacagaatcattgtcgggtatatctg |
423 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36608135 |
tgtgattattaaaacattagtggaaaaaacaacagtacaacgaagctcattagatagcatcagtcatgtgacataacagaatcattgtcgggtatatctg |
36608036 |
T |
|
| Q |
424 |
act-ctcgccatttacgttgcacaatgtatcattaccaaaattgtaaaaaccatcaattgataacagtgtcgcgtttagtttaactgactccaaccgaat |
522 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |
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| T |
36608035 |
actcctcgccatttacgttgcacaatgtatcattaccaaaattgtaaaaaccatcaactgataacattgtcacgtttagtttaactgactccaaccgaat |
36607936 |
T |
|
| Q |
523 |
tcctaactcgtctgtgatttgagatgtttttacacaaaacagcaattgcaattatgttagaaaaactttctgatcccacatttaagtatcttagtttgtt |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36607935 |
tcctaactcgtctgtgatttgagatgtttttacacaaaacagcaattgcaattatgttagaaaaactttctgatcctacatttaagtatcttagtttgtt |
36607836 |
T |
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| Q |
623 |
aaaattcaagagaaatggtttaccatggtatatacacacttggatatttgatatgcaagacctcttcctcgct |
695 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
36607835 |
aaaattcaagagaaatggtttaccatggtatatacacacttggatatttgatatgcaagactttttcctcgct |
36607763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 3006244 - 3006086
Alignment:
| Q |
148 |
taaaatcaaacacatgatagattatatgcactgattaattagttatgcaaatcttaatctcaaattgaagtttcaaggtttaatagcattcaaggaacta |
247 |
Q |
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||||| ||||||||| |||| ||||||||| || | ||||||| ||||||| |||||||||| | || ||||||||||||||| ||||||| ||||| |
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| T |
3006244 |
taaaaccaaacacataatagcttatatgcattggtctattagttttgcaaatgttaatctcaa-tgcaactttcaaggtttaataacattcaaacaacta |
3006146 |
T |
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| Q |
248 |
aggttcaatacaaaatagaaataaactgacataaaaataaacggtctaaatgtttctaaa |
307 |
Q |
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||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3006145 |
aggttcaatacaaaacacaaataaacggacataaaaataaacggtctaaatgtttctaaa |
3006086 |
T |
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