View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_8 (Length: 438)
Name: NF17446_low_8
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 31456380 - 31455975
Alignment:
| Q |
12 |
aattatactaatcggaaaagggatgaattacctgttgctgcttgaacactttttgataaatggtttatagctaatttatcaaaccaattatctttgtata |
111 |
Q |
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| T |
31456380 |
aattatactaatcggaaaagggatgaattacctgttgctgcttgaacactttttgataaatggtttatagctaatttgtcaaaccaattatctttgtata |
31456281 |
T |
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| Q |
112 |
cattagtttttcttaatgtttcttctgaaatatcatctgtaggccttgcaagaactccaactacaaaagtgtgttttggtttaagtcttagctttttcca |
211 |
Q |
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| T |
31456280 |
cattagtttttcttaatgtttcttctgaaatatcatctgtaggccttgcaagaactccaactacaaaagtgtgttttggtttaagtcttagcttcttcca |
31456181 |
T |
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| Q |
212 |
ctgagctaaagttggtgttaggctcatgttagttgcaatcatctttgaatccatttgtgagt-gttattgattttcatgtgaaaggagctttatatagga |
310 |
Q |
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| T |
31456180 |
ctgagctaaagttggtgttaggctcatgttatgtgcaatcatctttgaatccatttgtgagtagttattgattttcatgtgaaaggagctttatatagga |
31456081 |
T |
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| Q |
311 |
ggggattaataaggacaaatagtgcatgaaaagcatcttagcacaaacctcttactcctgattctgttttgtgactctctagatgctttatttgttgcct |
410 |
Q |
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| T |
31456080 |
ggggattaataaggacaaatagtgcatgaaaagcatcttagcacaaagctcttactcatgattctgttttgtgactctctagatgctttatttgttggct |
31455981 |
T |
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| Q |
411 |
tatggt |
416 |
Q |
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| T |
31455980 |
tatggt |
31455975 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 38465387 - 38465455
Alignment:
| Q |
41 |
acctgttgctgcttgaacactttttgataaatggtttatagctaatttatcaaaccaattatctttgta |
109 |
Q |
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|||||| || |||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
38465387 |
acctgtggcagcttgaactgtttttgataaatggtttattgctatcagatcaaaccagttatctttgta |
38465455 |
T |
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