View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17446_low_9 (Length: 398)
Name: NF17446_low_9
Description: NF17446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17446_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 47502166 - 47502541
Alignment:
| Q |
19 |
ggtgtatgatcaataggtgggtcctcgagcagacaaggacagggaaacatttccagcagcaacaaataacatgataatggtgcttgcaggcgcaggactg |
118 |
Q |
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| T |
47502166 |
ggtgtatgatcaataggtgggtcctcgagcagacaaggacagggaaacatttccagcagcaacaaataacatgataatggtgcttgcaggcgcaggactg |
47502265 |
T |
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| Q |
119 |
ctttggatgggttggagtggattcaacggtggagctccatttgtggctagtaccattgcatctcttgctatccttaacacacacgtgtgtactgctgcta |
218 |
Q |
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| T |
47502266 |
ctttggatgggttggagtggattcaacggtggagctccatttgtggctagtaccattgcatctcttgctatccttaacacacacgtgtgtactgctgcta |
47502365 |
T |
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| Q |
219 |
gcatcatggtatgggtcatgcttgataccttctactttggcaagcctactgtgtttggcgccgtacagggcatgatcactggtcttgtttgcattacacc |
318 |
Q |
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| T |
47502366 |
gcatcacggtatgggtcatgcttgataccttctactttggcaagcctactgtgtttggcgccgtacagggcatgatcactggtcttgtttgcattacacc |
47502465 |
T |
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| Q |
319 |
tgccgcaggtacacacaatcataa------------tgtccccaatcttcactaatcaatacaaatatagtacaca |
382 |
Q |
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| T |
47502466 |
tgccgcaggtacacacaatcataatgtcacatactttgtccccaatcttcactaatcaatacaaatatagtacaca |
47502541 |
T |
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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 7963714 - 7963627
Alignment:
| Q |
170 |
accattgcatctcttgctatccttaacacacacgtgtgtactgctgctagcatcatggtatgggtcatgcttgataccttctactttg |
257 |
Q |
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| T |
7963714 |
accattgcatctcttgctgtcctaacaacacacgtgtgtactgctgctagcatcatggtatgggtcatgctggataccttctactttg |
7963627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 33058425 - 33058338
Alignment:
| Q |
170 |
accattgcatctcttgctatccttaacacacacgtgtgtactgctgctagcatcatggtatgggtcatgcttgataccttctactttg |
257 |
Q |
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||||||| |||||||||| |||| | |||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33058425 |
accattgtatctcttgctgtcctaaccacaaacgtatgtactactgctagcatcatggtatgggtcatgctggataccttctactttg |
33058338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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