View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17447_high_13 (Length: 250)

Name: NF17447_high_13
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17447_high_13
NF17447_high_13
[»] chr5 (4 HSPs)
chr5 (1-243)||(29697877-29698110)
chr5 (1-173)||(29689710-29689874)
chr5 (115-241)||(29676827-29676939)
chr5 (14-62)||(40499774-40499822)
[»] chr8 (2 HSPs)
chr8 (14-73)||(29699166-29699225)
chr8 (20-74)||(26813910-26813964)
[»] chr2 (3 HSPs)
chr2 (14-108)||(5133651-5133743)
chr2 (41-73)||(9404512-9404544)
chr2 (41-73)||(34339035-34339067)
[»] chr6 (1 HSPs)
chr6 (20-62)||(13360658-13360700)
[»] chr7 (1 HSPs)
chr7 (20-107)||(753309-753393)
[»] chr4 (1 HSPs)
chr4 (41-73)||(25409798-25409830)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29697877 - 29698110
Alignment:
Q  1 tttttcttatatattatcatttgttatagaaataatatgcacataagcaattatatgataagtgtttatgctagtatagacacttgattaagttatttat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  29697877 tttttcttatatattatcatttgttatagaaataacatgcacataagcaattatatgatacatgtttatgctagtatagacacttgattaagttgtttat 29697976  T
Q  101 ccaaacaaagcctctatctacttgattttagtttagtttccgctttctttatgtcatggttgcatatggacagctataactg-nnnnnnnctcagttagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||        ||||||||||    
T  29697977 ccaaacaaagcctctatctacttgattttagtttagtttccgctttctttatgtcatggttgca----------tataactgaaaaaaaactcagttagc 29698066  T
Q  200 ttgtcatggtatgcttcttgttcccctttaatacacctttggta 243  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  29698067 ttgtcatggtatgcttcttgttccccttggatacacctttggta 29698110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 29689710 - 29689874
Alignment:
Q  1 tttttcttatatattatcatttgttatagaaataatatgcacataagcaattatatgataagtgtttatgctagtatagacacttgattaagttatttat 100  Q
    |||||| |||||| |||||||||||||||||||||         |||||| | ||||||||||||||||||||| ||| |  ||| |||||||| |||||    
T  29689710 tttttcatatatagtatcatttgttatagaaataa---------aagcaagtgtatgataagtgtttatgctagcataaatgcttaattaagttgtttat 29689800  T
Q  101 ccaaacaaagcctctatctacttgattttag--tttagtttccgctttctttatgtcatggttgcatatggacag 173  Q
    || ||||| ||||||||||||||||||||||  ||||||||| |||||||||||||| ||||||| |||||||||    
T  29689801 ccgaacaaggcctctatctacttgattttagtctttagtttctgctttctttatgtc-tggttgcctatggacag 29689874  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 29676827 - 29676939
Alignment:
Q  115 tatctacttgattttagtttagtttccgctttctttatgtcatggttgcatatggacagctataactgnnnnnnnctcagttagcttgtcatggtatgct 214  Q
    |||| |||||||||||||| |||||||    ||||||||||||||||||| ||||||||||||||          |||||||||||  ||||||||||||    
T  29676827 tatcaacttgattttagttcagtttcc----tctttatgtcatggttgcagatggacagctataa----------ctcagttagctcatcatggtatgct 29676912  T
Q  215 tcttgttcccctttaatacacctttgg 241  Q
    |  ||||||||||  ||||||||||||    
T  29676913 ttatgttccccttggatacacctttgg 29676939  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 40499774 - 40499822
Alignment:
Q  14 ttatcatttgttatagaaataatatgcacataagcaattatatgataag 62  Q
    ||||||||||||||||||||||  || ||||||||| ||||||||||||    
T  40499774 ttatcatttgttatagaaataacttgtacataagcacttatatgataag 40499822  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 29699225 - 29699166
Alignment:
Q  14 ttatcatttgttatagaaataatatgcacataagcaattatatgataagtgtttatgcta 73  Q
    ||||| ||||||||||||||||  || ||||||||| ||||||||||| | |||||||||    
T  29699225 ttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgcta 29699166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 26813910 - 26813964
Alignment:
Q  20 tttgttatagaaataatatgcacataagcaattatatgataagtgtttatgctag 74  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||| ||| ||||||    
T  26813910 tttgttatagaaataatttatacataagcacttatatgataagtttttgtgctag 26813964  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 5133743 - 5133651
Alignment:
Q  14 ttatcatttgttatagaaataatatgcacataagcaattatatgataagtgtttatgctagtatagacacttgattaagttatttatccaaacaa 108  Q
    ||||| |||||||||||||||   |  ||||||||||  |||||||||||| ||||||||  ||| |||||| |||||| | |||||||||||||    
T  5133743 ttatcttttgttatagaaatagcttatacataagcaa--atatgataagtgcttatgctataataaacacttaattaagctgtttatccaaacaa 5133651  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 9404544 - 9404512
Alignment:
Q  41 acataagcaattatatgataagtgtttatgcta 73  Q
    ||||||||| |||||||||||||||||||||||    
T  9404544 acataagcacttatatgataagtgtttatgcta 9404512  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 34339067 - 34339035
Alignment:
Q  41 acataagcaattatatgataagtgtttatgcta 73  Q
    ||||||||| |||||||||||||||||||||||    
T  34339067 acataagcacttatatgataagtgtttatgcta 34339035  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 13360700 - 13360658
Alignment:
Q  20 tttgttatagaaataatatgcacataagcaattatatgataag 62  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  13360700 tttgttatagaaatagtttgcacataagcacttatatgataag 13360658  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 753309 - 753393
Alignment:
Q  20 tttgttatagaaataatatgcacataagcaattatatgataagtgtttatgctagtatagacacttgattaagttatttatccaaaca 107  Q
    ||||||||||||||| | |  ||| ||||  ||||||||||| |||||||||||   || |||||| |||||||| ||||||||||||    
T  753309 tttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgcta---taaacacttaattaagttgtttatccaaaca 753393  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 25409830 - 25409798
Alignment:
Q  41 acataagcaattatatgataagtgtttatgcta 73  Q
    ||||||||| |||||||||||||||||||||||    
T  25409830 acataagcagttatatgataagtgtttatgcta 25409798  T

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