View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17447_high_14 (Length: 243)

Name: NF17447_high_14
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17447_high_14
NF17447_high_14
[»] chr5 (10 HSPs)
chr5 (1-227)||(19271462-19271688)
chr5 (84-221)||(34173386-34173522)
chr5 (84-209)||(19271659-19271783)
chr5 (77-160)||(18004825-18004907)
chr5 (77-175)||(2464821-2464918)
chr5 (96-179)||(578645-578727)
chr5 (85-175)||(8075715-8075804)
chr5 (103-161)||(13651041-13651098)
chr5 (85-175)||(28590994-28591084)
chr5 (131-221)||(32555453-32555543)
[»] chr2 (13 HSPs)
chr2 (36-198)||(31442480-31442641)
chr2 (85-227)||(31443107-31443248)
chr2 (83-227)||(21733631-21733774)
chr2 (77-175)||(32765089-32765186)
chr2 (145-218)||(14887419-14887492)
chr2 (77-161)||(7073816-7073900)
chr2 (77-175)||(14704157-14704254)
chr2 (83-161)||(21732281-21732358)
chr2 (77-175)||(33161940-33162037)
chr2 (77-175)||(39016257-39016354)
chr2 (85-175)||(40000217-40000306)
chr2 (100-160)||(5914909-5914968)
chr2 (84-160)||(17330100-17330175)
[»] chr3 (8 HSPs)
chr3 (43-227)||(40206002-40206180)
chr3 (84-175)||(48574340-48574430)
chr3 (74-161)||(55388225-55388311)
chr3 (83-161)||(19115047-19115124)
chr3 (99-161)||(33427897-33427958)
chr3 (85-175)||(55389351-55389440)
chr3 (65-178)||(40317919-40318031)
chr3 (77-161)||(53957839-53957922)
[»] chr6 (8 HSPs)
chr6 (97-218)||(5265327-5265447)
chr6 (123-216)||(24621208-24621301)
chr6 (64-216)||(19600086-19600236)
chr6 (64-178)||(12676332-12676445)
chr6 (172-218)||(24621310-24621356)
chr6 (145-227)||(29845600-29845682)
chr6 (65-106)||(3778657-3778698)
chr6 (145-227)||(29856864-29856947)
[»] chr7 (16 HSPs)
chr7 (65-218)||(39824258-39824407)
chr7 (130-227)||(22621247-22621344)
chr7 (45-161)||(2677102-2677217)
chr7 (77-175)||(35728960-35729057)
chr7 (77-161)||(6680387-6680470)
chr7 (78-161)||(7509327-7509410)
chr7 (147-227)||(19985190-19985269)
chr7 (76-159)||(12223552-12223634)
chr7 (65-168)||(12286769-12286870)
chr7 (77-175)||(7259559-7259655)
chr7 (57-159)||(24934965-24935066)
chr7 (77-160)||(43457635-43457716)
chr7 (77-161)||(44334324-44334407)
chr7 (77-140)||(45583780-45583843)
chr7 (83-175)||(48647323-48647414)
chr7 (75-175)||(48788544-48788643)
[»] scaffold0458 (1 HSPs)
scaffold0458 (147-218)||(6209-6280)
[»] chr1 (16 HSPs)
chr1 (77-175)||(32665643-32665741)
chr1 (147-218)||(39457437-39457508)
chr1 (77-175)||(3117821-3117918)
chr1 (69-226)||(39726533-39726688)
chr1 (77-161)||(34088323-34088406)
chr1 (77-156)||(7944326-7944404)
chr1 (104-227)||(39725459-39725582)
chr1 (65-215)||(39977464-39977613)
chr1 (83-160)||(22856865-22856941)
chr1 (78-159)||(25038069-25038149)
chr1 (78-159)||(25043281-25043361)
chr1 (99-161)||(5782560-5782621)
chr1 (74-188)||(6612569-6612682)
chr1 (77-161)||(6613841-6613924)
chr1 (77-161)||(9339812-9339895)
chr1 (145-221)||(50107124-50107200)
[»] chr4 (5 HSPs)
chr4 (43-178)||(42391726-42391860)
chr4 (65-178)||(38216615-38216725)
chr4 (144-229)||(12690957-12691041)
chr4 (77-175)||(42278201-42278298)
chr4 (84-161)||(4703078-4703154)
[»] chr8 (14 HSPs)
chr8 (102-221)||(31075170-31075287)
chr8 (77-175)||(5737014-5737111)
chr8 (77-175)||(5737877-5737974)
chr8 (77-175)||(32898319-32898416)
chr8 (97-227)||(33314978-33315107)
chr8 (65-227)||(39138506-39138667)
chr8 (98-198)||(24199079-24199179)
chr8 (130-209)||(2552152-2552230)
chr8 (84-179)||(8569556-8569650)
chr8 (84-175)||(41121277-41121367)
chr8 (77-175)||(1952844-1952941)
chr8 (112-218)||(31074123-31074229)
chr8 (111-220)||(9626348-9626457)
chr8 (74-163)||(35177558-35177646)
[»] scaffold0237 (2 HSPs)
scaffold0237 (145-227)||(1805-1887)
scaffold0237 (145-227)||(3066-3149)
[»] scaffold0767 (1 HSPs)
scaffold0767 (83-160)||(5784-5860)
[»] scaffold0026 (1 HSPs)
scaffold0026 (65-128)||(92978-93040)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19271688 - 19271462
Alignment:
Q  1 aatcaatatctccaagttgaatttcaaatcgaatcttaggggtttgagatttagcaatttgggaattaaattcggaatttatggatttgatatttaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19271688 aatcaatatctccaagttgaatttcaaatcgaatcttaggggtttgagatttagcgatttggggattaaattcggaatttatggatttgatatttaattt 19271589  T
Q  101 ggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattgg 200  Q
    ||||||||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19271588 ggggatattgaattttcagttcagggactaaagtgacaattttctactttcactttagtccttctaacacctcatgcaccttgttagcccaaaacattgg 19271489  T
Q  201 tcacctcatcagttaacataaattttt 227  Q
    ||||||||| |||||||||||||||||    
T  19271488 tcacctcattagttaacataaattttt 19271462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 34173522 - 34173386
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttg 183  Q
    ||||||| ||| |||||||||||||||| ||||  ||| || ||| |||||||| | ||| |||||||| |||||||| | | | |||| ||||||||||    
T  34173522 gatttgaaattcaatttggggatattgatttttg-gttcagagaccaaagtgatcattttctactttcagtttagtccctgtgataccttatgcaccttg 34173424  T
Q  184 tcagcccaaaacattggtcacctcatcagttaacataa 221  Q
    ||||| ||||||||| |||||||||||||||| |||||    
T  34173423 tcagcacaaaacatttgtcacctcatcagttagcataa 34173386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 19271659 - 19271783
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttg 183  Q
    ||||||| ||| || |||| |||||||| ||||| |||||||||  ||| |||| | ||| ||||||||||||||||| | | | |||||||||||||||    
T  19271659 gatttgaaattcaacttggagatattga-ttttcggtttagggatcaaaatgatcattttctactttcactttagtccatatgatacctcatgcaccttg 19271757  T
Q  184 tcagcccaaaacattggtcacctcat 209  Q
    | ||| ||||||||| |||| |||||    
T  19271758 ttagcacaaaacatttgtcatctcat 19271783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 18004907 - 18004825
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    ||||| |||||||||||| ||||||||||||||||||||| | || |||||| |||||||  | ||| |||||||| |||||||    
T  18004907 atttagggatttgatattcaatttggggatattgaattttga-ttcagggaccaaagtgactattttctactttcattttagtc 18004825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 2464918 - 2464821
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| |||||| |||||||  | ||| |||||||||||| |||| | | |||||||||    
T  2464918 atttagggatttgatattcaatttggggatattg-atttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcat 2464821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 578645 - 578727
Alignment:
Q  96 aatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcac 179  Q
    ||||| |||||||||| ||||| ||| |||||| |||||||| | | |||||||||| |||||||| | | |||||||||||||    
T  578645 aatttagggatattga-ttttcggttcagggaccaaagtgatcattctttactttcattttagtccatgtcacacctcatgcac 578727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 8075715 - 8075804
Alignment:
Q  85 atttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    |||||||||| |||||||| ||||||| ||||  ||| |||||| |||||||| | |||  ||||||||||| |||||| | |||||||||    
T  8075715 atttgatattcaatttgggaatattgatttttg-gttcagggaccaaagtgatcattttcgactttcactttggtccttgtgacacctcat 8075804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 13651041 - 13651098
Alignment:
Q  103 ggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||||||| ||||| ||| ||||||||||||||  | |||||||||||||||||||||    
T  13651041 ggatattga-ttttcggttcagggactaaagtgaccattttttactttcactttagtcc 13651098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 28590994 - 28591084
Alignment:
Q  85 atttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    |||||||||| |||||||| ||||||| ||||  ||| |||||| |||||||  | ||| |||||||||||| |||| | | |||||||||    
T  28590994 atttgatattcaatttgggaatattgattttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcat 28591084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 32555453 - 32555543
Alignment:
Q  131 aagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataa 221  Q
    |||||| || ||| ||||||||||||||||| | | ||||||||| | ||||||||||  ||||| || ||||  |||||| |||||||||    
T  32555453 aagtgacaattttctactttcactttagtccatgtgacacctcatactccttgtcagcataaaacctttgtcatatcatcaattaacataa 32555543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 31442641 - 31442480
Alignment:
Q  36 ttaggggtttgagatttagcaatttgggaattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtg 135  Q
    |||||| |||||||||||| ||||| || |||||| |||| || || |||||||| ||| ||||| |||||||||| ||||| ||| |||||| || |||    
T  31442641 ttagggatttgagatttaggaatttagggattaaaatcgggatatagggatttgagattcaatttagggatattga-ttttcggttcagggaccaatgtg 31442543  T
Q  136 ataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacatt 198  Q
     | | |||| |||||||||||||||||| | ||||||||||||| |||||||| |||||||||    
T  31442542 ttcatttttgactttcactttagtccttatgacacctcatgcactttgtcagcacaaaacatt 31442480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 31443107 - 31443248
Alignment:
Q  85 atttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgt 184  Q
    |||||| ||||||||||| |||||||| ||||| ||| ||| || ||| ||| || ||| ||||||||||||||||  | | |||||||||||||||||     
T  31443107 atttgagatttaatttggagatattga-ttttcggttcaggaaccaaaatgacaattttctactttcactttagtcactgtgacacctcatgcaccttgc 31443205  T
Q  185 cagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    || | ||||| ||| | ||| ||| ||||||||| || |||||    
T  31443206 caacacaaaatatttgccacttcaccagttaacaaaagttttt 31443248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 21733631 - 21733774
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcacctt 182  Q
    |||||||| ||| |||||||| ||||||| ||||| ||| || ||| |||||||  | |||||||||||||||||||| |  | |||| |||| | ||||    
T  21733631 ggatttgagattcaatttgggaatattga-ttttcggttcagagaccaaagtgaccattttttactttcactttagtcatcgtgacacttcatactcctt 21733729  T
Q  183 gtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    ||||||  |||||||  ||||| |||||| |||||| || |||||    
T  21733730 gtcagcataaaacatgtgtcacatcatcacttaacagaatttttt 21733774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 32765186 - 32765089
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| |||||| |||| ||  | ||| ||||||||||||||||| | | |||||||||    
T  32765186 atttagggatttgatattcaatttggggatattg-atttttggttcagggaccaaagcgaccattttctactttcactttagtccctatgacacctcat 32765089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 14887419 - 14887492
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaaca 218  Q
    ||||||||||||||||| | | ||||||||| | |||||| |||  |||||||| ||||| |||||||||||||    
T  14887419 tactttcactttagtccctgtgacacctcatactccttgttagcataaaacatttgtcacatcatcagttaaca 14887492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 7073900 - 7073816
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||| ||| ||||| || ||||||||||||  ||| |||||| |||||||| | |||||| |||| |||||||||    
T  7073900 atttaaggatttgagattcaatttaggaatattgaatttttggttcagggaccaaagtgatcattttttattttcgctttagtcc 7073816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 14704254 - 14704157
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| | |||| |||||||  | ||| |||||||||||| |||| | | |||||||||    
T  14704254 atttagggatttgatattcaatttggggatattg-atttttggttcatggaccaaagtgactattttctactttcactttggtccctgtgacacctcat 14704157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 21732358 - 21732281
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    |||||||| ||| |||||||||||||| ||||||  ||| |||||| |||||||  | ||| |||||||||||||||||    
T  21732358 ggatttgagattcaatttggggatatt-aatttttggttcagggaccaaagtgaccattttctactttcactttagtcc 21732281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 33162037 - 33161940
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||| |||  |||||||||||| || ||||  ||| ||||||||||||||| | ||| |||||||| ||||||| || | |||||||||    
T  33162037 atttaaggatttgagattcgatttggggatatcgatttttg-gttcagggactaaagtgatgattttctactttcattttagtctttgtgacacctcat 33161940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 39016257 - 39016354
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||| ||||| |||||||| ||||||| ||||  ||| |||||| ||||||| || ||| |||||||||||| |||| | | |||||||||    
T  39016257 atttagggatttcatattcaatttgggcatattgatttttg-gttcagggaccaaagtgacaattttctactttcactttggtccatgtgacacctcat 39016354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 40000217 - 40000306
Alignment:
Q  85 atttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    |||||||||| |||||||| ||||||| ||||  ||| | |||| |||||||| | ||| |||||||||||| |||| ||| |||||||||    
T  40000217 atttgatattcaatttgggaatattgatttttg-gttcaaggaccaaagtgatcattttctactttcactttggtccctctgacacctcat 40000306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 5914909 - 5914968
Alignment:
Q  100 tggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    |||||||||||| ||||  ||| |||||||||||||| || |||||||||||| |||||||    
T  5914909 tggggatattgatttttg-gttcagggactaaagtgacaattttttactttcattttagtc 5914968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 17330100 - 17330175
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    ||||||| ||| ||||| |||||||||| ||||  ||| |||||| |||||||  | ||||||||||||||||||||    
T  17330100 gatttgagattcaatttagggatattga-ttttgggttcagggaccaaagtgaccattttttactttcactttagtc 17330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 40206180 - 40206002
Alignment:
Q  43 tttgagatttagcaatttgggaattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactt 142  Q
    ||||||||||||  ||||||| ||||||||||||||||| |||||||| ||||||||||| |       |||||| ||| | |||| |||||||  | ||    
T  40206180 tttgagatttagggatttggggattaaattcggaatttaaggatttgagatttaatttggagg------attttcggttcaaggaccaaagtgaccattt 40206087  T
Q  143 tttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    | |||||||||||||| |||| | ||| |||| ||||||||||||| ||||||||| | |||||||| ||||||||||| |||||    
T  40206086 tatactttcactttagcccttgtgacaactcacgcaccttgtcagcacaaaacatttgccacctcattagttaacataatttttt 40206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 48574340 - 48574430
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||||||||| |||||||||||||||||||||  ||| | ||||||||||||  | ||| |||||||||||| |||| | | |||||||||    
T  48574340 gatttgatattcaatttggggatattgaatttt-ggttcaaggactaaagtgaccattttctactttcactttggtccctgtgacacctcat 48574430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 55388311 - 55388225
Alignment:
Q  74 ggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    |||||||| |||||||||||| ||||||||||||||| |||||  ||| |||||| |||||||  | ||| |||||||||||| ||||    
T  55388311 ggaatttagggatttgatattcaatttggggatattg-atttttggttcagggaccaaagtgaccattttctactttcactttggtcc 55388225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 19115047 - 19115124
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    |||| ||||||| || ||||||||||||| |||| |||| | ||||||||||| | | ||| |||||||||||||||||    
T  19115047 ggatatgatattcaaattggggatattgattttt-agttcatggactaaagtggttattttctactttcactttagtcc 19115124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 33427958 - 33427897
Alignment:
Q  99 ttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||||||||||| ||||  ||| |||| |||||||||||| ||| |||||||||||||||||    
T  33427958 ttggggatattgatttttg-gttcaggggctaaagtgataattttctactttcactttagtcc 33427897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 55389351 - 55389440
Alignment:
Q  85 atttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    |||||||||| |||||||| ||||||| ||||| ||| |||||| |||||||  | ||| |||||||||||| |||| | | |||||||||    
T  55389351 atttgatattcaatttgggaatattga-ttttcggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcat 55389440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 40318031 - 40317919
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    ||||||||| |  ||||||||||||| ||||||||| || ||||||| |||| | || |||||| |||||||  | ||| |||||||  ||||||| ||     
T  40318031 attaaattcaggctttatggatttgagatttaattttggaatattgatttttga-ttcagggaccaaagtgactattttctactttcgttttagtctttg 40317933  T
Q  165 taacacctcatgca 178  Q
    ||||| ||||||||    
T  40317932 taacaactcatgca 40317919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 53957922 - 53957839
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||| ||| ||||||||||||||| |||||  ||| | |||||||||| || | ||| |||||||||||| ||||    
T  53957922 atttagggatttgacattcaatttggggatattg-atttttggttcatggactaaagtaatcattttctactttcactttggtcc 53957839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 218
Target Start/End: Complemental strand, 5265447 - 5265327
Alignment:
Q  97 atttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaaca 196  Q
    ||||||||||||||| || | ||||||||||  ||| |||| | ||||||||||||||||| ||| | | |||||||||||||||||| ||| |||||||    
T  5265447 atttggggatattga-ttctaagtttagggatcaaaatgattattttttactttcactttactccatgtgacacctcatgcaccttgttagcacaaaaca 5265349  T
Q  197 ttggtcacctcatcagttaaca 218  Q
    || |||||||||||| ||||||    
T  5265348 tttgtcacctcatcaattaaca 5265327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 24621301 - 24621208
Alignment:
Q  123 agggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaa 216  Q
    |||||| |||||||| | ||| |||||||| |||||||||| ||||||||||||||  |||||||| ||||||||| |  ||||||||||||||    
T  24621301 agggaccaaagtgatcattttctactttcattttagtccttgtaacacctcatgcattttgtcagcacaaaacatttgagacctcatcagttaa 24621208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 19600086 - 19600236
Alignment:
Q  64 aattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcctt 163  Q
    |||||||||| | ||||| | || ||| ||| ||||| |||||||| |||||||  |||||| || |||||||  | ||| ||||||||||||||||| |    
T  19600086 aattaaattcaggatttaggaatctgagattcaatttagggatatt-aattttcgatttagg-accaaagtgaccattttctactttcactttagtccct 19600183  T
Q  164 ctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaa 216  Q
     | |||  ||||||||||||||| | ||||||||| |||||||||||| ||||    
T  19600184 gtgacatttcatgcaccttgtcaccacaaaacatttgtcacctcatcaattaa 19600236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 12676332 - 12676445
Alignment:
Q  64 aattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcctt 163  Q
    |||||||||||  ||||| |||||||| ||| |||||| | ||||| ||||||| |||||||||||||||||| || ||| || ||| |||||| ||| |    
T  12676332 aattaaattcgagatttagggatttgagattcaatttgtgtatatt-aattttcggtttagggactaaagtgacaattttctaatttaactttaatccct 12676430  T
Q  164 ctaacacctcatgca 178  Q
     | ||||||||||||    
T  12676431 atgacacctcatgca 12676445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 24621310 - 24621356
Alignment:
Q  172 tcatgcaccttgtcagcccaaaacattggtcacctcatcagttaaca 218  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  24621310 tcatgcaccttgtcagcacaaaacatttgtcaccccatcagttaaca 24621356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 29845682 - 29845600
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    ||||| ||||||||| |||   ||||||||||||||||||||||  |||||||| |||||| ||||| |||||| || |||||    
T  29845682 tacttccactttagttcttgcgacacctcatgcaccttgtcagcaaaaaacattcgtcaccccatcaattaacaaaagttttt 29845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 3778657 - 3778698
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggat 106  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  3778657 attaaattcggaatttatggatttgagattcaatttggggat 3778698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 29856947 - 29856864
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagc-ccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||   |||||||| |||||| ||||| |||||| || |||||    
T  29856947 tacttccactttaatccttgtgacacctcatgcaccttgtcagcgaaaaaacatttgtcaccccatcaattaacaaaagttttt 29856864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 218
Target Start/End: Complemental strand, 39824407 - 39824258
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    ||||||||  |||||||||||||||| ||| |||||||| ||||||| || |    | |||| |||||||||  | ||| ||||||||||||||||| |     
T  39824407 attaaatttagaatttatggatttgaaattcaatttgggaatattgatttat----tcaggggctaaagtgaccattttctactttcactttagtccctg 39824312  T
Q  165 taacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaaca 218  Q
    | |||| ||||||||||||||||| ||||||||| |   |||||||||||||||    
T  39824311 tgacacttcatgcaccttgtcagcacaaaacatttgcatcctcatcagttaaca 39824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 22621344 - 22621247
Alignment:
Q  130 aaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    |||||||| | ||| ||||||||||||||||||| | |||| |||||| ||||||||||  |||||||| |||| |||||||||||||| || |||||    
T  22621344 aaagtgatcattttctactttcactttagtccttgtgacacatcatgcgccttgtcagcaaaaaacatttgtcaactcatcagttaacagaagttttt 22621247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 2677217 - 2677102
Alignment:
Q  45 tgagatttagcaatttgggaattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttt 144  Q
    ||||||||||  ||||| | ||||||||||  || || |||||||| ||||||||| |||||||||| |||| |||| |||||  |||||||| | |||     
T  2677217 tgagatttagggatttgaggattaaattcgagatctagggatttgagatttaatttagggatattgattttt-agttcagggaacaaagtgatcattttc 2677119  T
Q  145 tactttcactttagtcc 161  Q
    |||||||||||||||||    
T  2677118 tactttcactttagtcc 2677102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 35728960 - 35729057
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||| ||||| |||||||| ||||||| ||||  ||| |||||| |||||||  ||||| |||||||||||| |||| | |||||||||||    
T  35728960 atttagggatttaatattcaatttgggaatattgatttttg-gttcagggaccaaagtgaccactttctactttcactttggtccatataacacctcat 35729057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 6680387 - 6680470
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||||| |||| | ||| |||||||||||||||| ||||  |||||||||||||| |||  | ||| |||||||||||||||||    
T  6680387 atttatgaatttaaaattcaatttggggatattgatttttg-gtttagggactaaaatgactattttctactttcactttagtcc 6680470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 7509327 - 7509410
Alignment:
Q  78 tttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtga-taactttttactttcactttagtcc 161  Q
    |||| |||||||| ||| ||||||||||||||| |||||  |||||||||| ||||||| ||  ||| |||||||||||||||||    
T  7509327 tttagggatttgagattcaatttggggatattg-atttttggtttagggaccaaagtgactatttttctactttcactttagtcc 7509410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 19985190 - 19985269
Alignment:
Q  147 ctttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    |||||||||||||||||   |||| ||||||||||| ||| | ||||||||| | ||||||||||||||||| || |||||    
T  19985190 ctttcactttagtccttgcgacacatcatgcaccttatca-cacaaaacatttgccacctcatcagttaacaaaagttttt 19985269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 12223552 - 12223634
Alignment:
Q  76 aatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagt 159  Q
    |||||| |||||||| ||| ||||||||||||||| |||||  ||| | |||  ||||||| || |||||||||||||||||||    
T  12223552 aatttagggatttgagattcaatttggggatattg-atttttggttcaaggatcaaagtgacaattttttactttcactttagt 12223634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 12286870 - 12286769
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    ||||||||||| |||||  ||||||| ||||||||||| |||||||| |||| | |||||  ||||||||||  | ||| ||||||||| |||||||||     
T  12286870 attaaattcgggatttagagatttgagatttaatttggagatattgatttttga-tttagcaactaaagtga-cattttatactttcaccttagtccttg 12286773  T
Q  165 taac 168  Q
    ||||    
T  12286772 taac 12286769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 7259559 - 7259655
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| |||||||||||||| ||||||  ||| |||||| |||||||  | ||| || ||||||||| |||||| | |||||||||    
T  7259559 atttagggatttgatattcaatttggggatatt-aatttttggttcagggaccaaagtgaccattttcta-tttcactttggtccttgtgacacctcat 7259655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 24935066 - 24934965
Alignment:
Q  57 atttgggaattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcacttt 156  Q
    ||||||| |||| ||||||  |||| |||||||| ||| ||||| || ||||||| ||||| |||||||||  |||||||  | ||| ||||||||||||    
T  24935066 atttggggattatattcggggtttagggatttgagattcaatttaggaatattga-ttttcggtttagggatcaaagtgaccattttctactttcacttt 24934968  T
Q  157 agt 159  Q
    |||    
T  24934967 agt 24934965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 43457716 - 43457635
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    ||||| |||||||| ||| ||||| |||||||||| ||||  | | |||||| |||||||  | ||||||||||||||||||||    
T  43457716 atttaaggatttgagattcaatttagggatattgattttt--ggtcagggaccaaagtgaccattttttactttcactttagtc 43457635  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 44334324 - 44334407
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| | |||| |||||||  | ||| |||||||||||| ||||    
T  44334324 atttagggatttgatattcaatttggggatattg-atttttggttcatggaccaaagtgactattttctactttcactttggtcc 44334407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 45583843 - 45583780
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttaggga-ctaaagtgataac 140  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  45583843 atttagggatttgatattcaatttggggatattg-atttttggttcagggacctaaagtgataac 45583780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 48647323 - 48647414
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||||| |||| |||||||| ||||||| ||||  ||| |||||| |||||||  | ||| |||||||||||| |||||| | |||||||||    
T  48647323 ggatttggtattcaatttgggcatattgatttttg-gttcagggacgaaagtgaccattttctactttcactttggtccttgtgacacctcat 48647414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 48788544 - 48788643
Alignment:
Q  75 gaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctca 174  Q
    ||||||| | |||||||||| |||||| | ||||||| ||||  ||| |||||| |||||||  | ||| |||||||||||| |||||| | ||||||||    
T  48788544 gaatttaggaatttgatattcaatttgtgaatattgatttttg-gttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctca 48788642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 6280 - 6209
Alignment:
Q  147 ctttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaaca 218  Q
    ||||||||||||||||| | |||| ||||||||||||||||| ||||||||| | |||||||| ||||||||    
T  6280 ctttcactttagtccttgtgacacatcatgcaccttgtcagcacaaaacatttgccacctcattagttaaca 6209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 32665643 - 32665741
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| |||||||||||||||| ||||  ||| |||||| |||||||  | ||| |||||||||||| |||||| | |||||||||    
T  32665643 atttagggatttgatattcaatttggggatattgatttttgtgttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcat 32665741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 39457437 - 39457508
Alignment:
Q  147 ctttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaaca 218  Q
    ||||||||||||||||| | |||| ||||||| ||||||||| |||||||||  ||||||||| ||||||||    
T  39457437 ctttcactttagtccttgtgacacatcatgcatcttgtcagcacaaaacatttatcacctcattagttaaca 39457508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 3117918 - 3117821
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| |||||||||||||| ||||||  ||| | |||||||| |||| | ||| |||||||||||||||| || | |||||||||    
T  3117918 atttagggatttgatattcaatttggggatatt-aatttttggttcaaggactaaaatgatcattttctactttcactttagtcattgtgacacctcat 3117821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 39726533 - 39726688
Alignment:
Q  69 aattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaac 168  Q
    ||||||| ||||| |||||||  ||| ||||||| |||||||| ||||  ||| |||| ||||| |||  | ||| ||||||||||||||||  | | |     
T  39726533 aattcgggatttagggatttggaattcaatttggtgatattgatttttg-gttcaggg-ctaaaatgactattttctactttcactttagtctatatgat 39726630  T
Q  169 acctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaatttt 226  Q
    ||||| | |||||||||||| ||||||| | |||||||||||| |||||| |||||||    
T  39726631 acctcgtacaccttgtcagctcaaaacacttgtcacctcatcaattaacaaaaatttt 39726688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 34088323 - 34088406
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||| ||| |||||||||||||||||||||  ||| |||||| ||||||| |  ||| |||||||||||||||||    
T  34088323 atttagggatttgaaattcaatttggggatattgaatttt-tgttcagggaccaaagtgacacatttctactttcactttagtcc 34088406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 7944404 - 7944326
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcacttt 156  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||  |||||| |||||||||| ||| ||||||||||||    
T  7944404 atttagggatttgatattcaatttggggatattg-atttttggtccagggaccaaagtgataattttctactttcacttt 7944326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 39725582 - 39725459
Alignment:
Q  104 gatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtca 203  Q
    |||||||| ||||  ||| ||||||| ||||||| | ||| |||||||| |||||||| |   |||||| || |||||||||||| ||||||||| | ||    
T  39725582 gatattgattttttggttaagggactgaagtgatcattttctactttcattttagtcccttcgacaccttattcaccttgtcagcacaaaacatttgcca 39725483  T
Q  204 cctcatcagttaacataaattttt 227  Q
    | |||||||| |||| || |||||    
T  39725482 catcatcagtcaacaaaagttttt 39725459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 39977613 - 39977464
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    |||||||||| ||| || |||||||  ||| |||||| ||||||||| ||||  ||| || ||| ||||| || | ||| ||| |  ||||||||||||     
T  39977613 attaaattcgaaatatagggatttgcgattcaatttgaggatattgatttttg-gttcagagaccaaagttatcattttctacatctactttagtccttg 39977515  T
Q  165 taacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagtta 215  Q
    | |||||||||| ||||||| ||| ||||| ||| | ||||||||||||||    
T  39977514 tgacacctcatgtaccttgtgagcacaaaatatttgacacctcatcagtta 39977464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 22856941 - 22856865
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    |||||||| ||| |||||| ||||||||||||||  ||| ||| ||||||||||| | ||| ||||||||||||||||    
T  22856941 ggatttgagattcaatttgaggatattgaattttg-gttcaggaactaaagtgatcattttctactttcactttagtc 22856865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 25038149 - 25038069
Alignment:
Q  78 tttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagt 159  Q
    |||| |||||||| ||| ||||| |||||||||| ||||  ||| |||||| |||||||||| ||| |||||||||||||||    
T  25038149 tttagggatttgagattcaatttagggatattgatttttg-gttcagggaccaaagtgataattttctactttcactttagt 25038069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 25043361 - 25043281
Alignment:
Q  78 tttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagt 159  Q
    |||| |||||||| ||| ||||| |||||||||| ||||  ||| |||||| |||||||||| ||| |||||||||||||||    
T  25043361 tttagggatttgagattcaatttagggatattgatttttg-gttcagggaccaaagtgataattttctactttcactttagt 25043281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 5782621 - 5782560
Alignment:
Q  99 ttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||||||||||| ||||  ||||||||| |||||||| || |||||| ||||||||||||||    
T  5782621 ttggggatattgatttttg-gtttagggattaaagtgacaattttttagtttcactttagtcc 5782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 6612682 - 6612569
Alignment:
Q  74 ggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctc 173  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||  ||| | |||| |||||||| | ||| |||||| | |||||||| | | |||||||    
T  6612682 ggaatttagggatttgagattcaatttggggatattg-atttttggttcaaggacaaaagtgatcattttctactttgaatttagtccctgtgacacctc 6612584  T
Q  174 atgcaccttgtcagc 188  Q
    ||   ||||||||||    
T  6612583 atattccttgtcagc 6612569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 6613841 - 6613924
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||| ||| ||||||||||||||| |||||  ||| |||||  ||||| |||| ||  |||||||||||||||||    
T  6613841 atttagggatttgagattcaatttggggatattg-atttttggttcagggaacaaagtaataatttcctactttcactttagtcc 6613924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 9339895 - 9339812
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| || ||| |||||||  | ||| |||||||||||| ||||    
T  9339895 atttagggatttgatattcaatttggggatattg-atttttggttcagagaccaaagtgaccattttctactttcactttggtcc 9339812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 50107124 - 50107200
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataa 221  Q
    ||||||||| ||||||| | | ||||||||| | ||||||||||  ||||| || ||||  ||||||||||||||||    
T  50107124 tactttcacgttagtccatgtgacacctcatactccttgtcagcataaaacctttgtcatgtcatcagttaacataa 50107200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 42391726 - 42391860
Alignment:
Q  43 tttgagatttagcaatttgggaattaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactt 142  Q
    ||||||||||||  ||||||| ||| ||||| | ||||| |||||||| | | ||||||  ||||| ||||||| |||| ||||||||||||||  | ||    
T  42391726 tttgagatttagggatttggggatttaattcaggatttagggatttgagactcaatttgaagatat-gaatttttagttcagggactaaagtgaccattt 42391824  T
Q  143 tttactttcactttagtccttctaacacctcatgca 178  Q
    | ||||||||||||||||| | | ||||||| ||||    
T  42391825 tctactttcactttagtccatgtgacacctcctgca 42391860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 38216725 - 38216615
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    ||||||||||| ||||| |||||||||||| ||||| ||||||||| ||| ||  || ||| || |||| |  | | |||||||||||||||||||| |     
T  38216725 attaaattcgggatttagggatttgatattcaattttgggatattg-attatcgattcaggaaccaaaggg--accattttactttcactttagtccatg 38216629  T
Q  165 taacacctcatgca 178  Q
    ||||||||||||||    
T  38216628 taacacctcatgca 38216615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 12691041 - 12690957
Alignment:
Q  144 ttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttttg 229  Q
    |||||||||||||||||| | ||| |||||||||||||||| | | | ||||||| || ||||||||| |||||| || |||||||    
T  12691041 ttactttcactttagtccctgtaatacctcatgcaccttgtaaacac-aaacatttgtaacctcatcaattaacagaagttttttg 12690957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 42278298 - 42278201
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| ||||||||||||||| |||||  ||| |||||| |||||||  | ||| || ||||||||| |||| | | |||||||||    
T  42278298 atttagggatttgatattcaatttggggatattg-atttttggttcagggaccaaagtgaccattttctagtttcactttggtccctgtgacacctcat 42278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 4703078 - 4703154
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcc 161  Q
    ||||||| ||| |||||||||||||||| ||||  ||  |||||| ||||||| || ||| |||||||||||||||||    
T  4703078 gatttgagattcaatttggggatattgatttttgggtc-agggaccaaagtgacaattttatactttcactttagtcc 4703154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 31075170 - 31075287
Alignment:
Q  102 gggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggt 201  Q
    |||||||||| ||||||||| |||||| |||||||  ||||| |||||||| |||||||||| | ||||||| | | |||||||| |  ||||| || ||    
T  31075170 gggatattga-ttttcagttcagggaccaaagtgaccactttctactttca-tttagtccttgtgacacctcgtactccttgtcaccataaaacctttgt 31075267  T
Q  202 cacctcatcagttaacataa 221  Q
    ||| ||||||||||| ||||    
T  31075268 cacgtcatcagttaatataa 31075287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 5737111 - 5737014
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||| ||| ||||||||||||||  |||||  | | |||||| |||||||||| ||| |||||| |||||||||||| | |||||||||    
T  5737111 atttaaggatttgagattcaatttggggatatttgatttttggatcagggaccaaagtgataa-tttctacttttactttagtccttgtgacacctcat 5737014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 5737877 - 5737974
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||| ||| |||||||||||||||| |||| | ||||| ||| |||||||  | |||||||||| |||||||||| | | |||||||||    
T  5737877 atttagggatttgagattcaatttggggatattgatttttga-tttagagaccaaagtgaccattttttacttttactttagtccatgtgacacctcat 5737974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 32898319 - 32898416
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| |||||| |||||||| |||||  ||| |||||| |||||||  | ||| |||||||||||| |||||| | |||||||||    
T  32898319 atttagggatttgatattcaatttgaggatattg-atttttggttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcat 32898416  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 33315107 - 33314978
Alignment:
Q  97 atttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaaca 196  Q
    ||||||||||||| |||||||| || | |||| |||||||  | ||| |||||||||||| |||| | | ||||||||| | ||||||||||  ||||||    
T  33315107 atttggggatatt-aattttcaattcacggaccaaagtgactattttctactttcactttggtccatgtgacacctcatactccttgtcagcaaaaaaca 33315009  T
Q  197 ttggtcacctcatcagttaacataaattttt 227  Q
    |  ||||| |||||| |||||| || |||||    
T  33315008 tgtgtcacttcatcacttaacagaatttttt 33314978  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 227
Target Start/End: Original strand, 39138506 - 39138667
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttc 164  Q
    ||||||||||  ||||| |||||||| ||| |||| ||||||||||| ||||| ||  | | |  |||||||  | ||| |||||||||||||||||||     
T  39138506 attaaattcgagatttagggatttgagattcaattcggggatattga-ttttcggtacaagaatcaaagtgaccattttctactttcactttagtccttg 39138604  T
Q  165 taacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    | ||||||||| ||| ||||||||  ||||| || ||||| || ||| ||||| ||| |||||    
T  39138605 tgacacctcatacactttgtcagcataaaacttttgtcacatcgtcaattaacgtaagttttt 39138667  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 24199179 - 24199079
Alignment:
Q  98 tttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacat 197  Q
    |||||||||||||| |||||  || |||||| ||| |||| | |||||||||||||||||||   | | ||||||||| | ||||||||||  |||||||    
T  24199179 tttggggatattgatttttcgattcagggaccaaaatgatcattttttactttcactttagtatctgtgacacctcataccccttgtcagcataaaacat 24199080  T
Q  198 t 198  Q
    |    
T  24199079 t 24199079  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 2552230 - 2552152
Alignment:
Q  130 aaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcat 209  Q
    ||||||| || ||| ||||||||||||||||| | | |||||||||| | ||||| ||| ||||||||| ||||||||||    
T  2552230 aaagtgacaattttctactttcactttagtcc-tgtgacacctcatgaatcttgttagcacaaaacatttgtcacctcat 2552152  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 8569650 - 8569556
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcac 179  Q
    ||||||| ||| |||||| ||||||||| |||| |||| |||||  ||| |||||| ||||| |||||| |||||||| | | |||||||||||||    
T  8569650 gatttgagattcaatttgtggatattgattttt-agttcagggatcaaaatgataattttttcctttcattttagtccatgtgacacctcatgcac 8569556  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 41121367 - 41121277
Alignment:
Q  84 gatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||||| ||| |||||||||||||||| ||||  ||| | |||| ||||||| || ||| |||||||||||||| |||| | |||||||||    
T  41121367 gatttgaaattcaatttggggatattgatttttg-gttcaaggaccaaagtgacaattttctactttcactttagcccttgttacacctcat 41121277  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 1952844 - 1952941
Alignment:
Q  77 atttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcat 175  Q
    ||||| |||||||||||| |||||||| |||||| |||||  ||| |||||| |||||||  | ||| |||||||||||| |||| | | |||||||||    
T  1952844 atttagggatttgatattcaatttgggcatattg-atttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcat 1952941  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 31074229 - 31074123
Alignment:
Q  112 attttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatca 211  Q
    |||||||| | |||||| |||||||| | ||| || ||||||||||||||   | ||||||||| | |||||| |||  |||||||| | ||| ||||||    
T  31074229 attttcaggtcagggaccaaagtgatcattttctattttcactttagtccccgtgacacctcataccccttgttagcataaaacatttgccacatcatca 31074130  T
Q  212 gttaaca 218  Q
    |||||||    
T  31074129 gttaaca 31074123  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 9626348 - 9626457
Alignment:
Q  111 aattttcagtttagggactaaagtgataactttttactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatc 210  Q
    ||||||| ||| ||||| ||||||| | | ||| ||||||||||||||| | | | ||||||||| | | ||||||||  ||||| || ||||| |||||    
T  9626348 aattttcggttcagggattaaagtggtcaatttctactttcactttagttcatgtgacacctcatactctttgtcagcataaaacttttgtcacatcatc 9626447  T
Q  211 agttaacata 220  Q
     |||||||||    
T  9626448 ggttaacata 9626457  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 35177646 - 35177558
Alignment:
Q  74 ggaatttatggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtcctt 163  Q
    |||||||| |||||||||||| |||||||||||| || |||||  ||| |||||| ||||| |  | ||| |||||||||||| ||||||    
T  35177646 ggaatttagggatttgatattcaatttggggatactg-atttttggttcagggaccaaagtaaccattttctactttcactttggtcctt 35177558  T

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Target: scaffold0237 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 1887 - 1805
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagcccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    ||||| ||||||||| |||   ||||||||||||||||||||||  |||||||| |||||| ||||| |||||| || |||||    
T  1887 tacttccactttagttcttgcgacacctcatgcaccttgtcagcaaaaaacattcgtcaccccatcaattaacaaaagttttt 1805  T

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Target: scaffold0237; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 3149 - 3066
Alignment:
Q  145 tactttcactttagtccttctaacacctcatgcaccttgtcagc-ccaaaacattggtcacctcatcagttaacataaattttt 227  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||   |||||||| |||||| ||||| |||||| || |||||    
T  3149 tacttccactttaatccttgtgacacctcatgcaccttgtcagcgaaaaaacatttgtcaccccatcaattaacaaaagttttt 3066  T

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Target: scaffold0767 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 5860 - 5784
Alignment:
Q  83 ggatttgatatttaatttggggatattgaattttcagtttagggactaaagtgataactttttactttcactttagtc 160  Q
    |||||||| |||||||||| ||||||||| ||||  ||| |||||  |||||||  ||||||||||||||||||||||    
T  5860 ggatttgagatttaatttgaggatattgatttttg-gttcagggatcaaagtgaccactttttactttcactttagtc 5784  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 92978 - 93040
Alignment:
Q  65 attaaattcggaatttatggatttgatatttaatttggggatattgaattttcagtttagggac 128  Q
    |||||||| || ||||| |||||| | ||||||||||||||||||| ||||||| |||||||||    
T  92978 attaaatttgggatttaaggattttagatttaatttggggatattg-attttcaatttagggac 93040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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