View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_high_15 (Length: 242)
Name: NF17447_high_15
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 55477178 - 55477043
Alignment:
| Q |
83 |
tcagctgaacttaacatcaatatatggcctttctctcggagtaggtcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
182 |
Q |
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| T |
55477178 |
tcagctgaacttaacatcaatatatggcctttctctcggagtagatcttctggaaactcagttagcagacccaagtcctccaccggagctccggttaccc |
55477079 |
T |
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| Q |
183 |
ggaaagtaaacagtgcgccttgctcgaggagcaact |
218 |
Q |
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| T |
55477078 |
ggaaagtaaacagtgcgccttgctcgaggagcaact |
55477043 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 8845411 - 8845357
Alignment:
| Q |
150 |
gacccaagtcctccaccggagctccggttacccggaaagtaaacagtgcgccttg |
204 |
Q |
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| T |
8845411 |
gacccaaattcttcaccggagctccggtgacccggaaagttaacagtgcaccttg |
8845357 |
T |
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