View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_high_16 (Length: 217)
Name: NF17447_high_16
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5106140 - 5105939
Alignment:
| Q |
1 |
ctcaagtatttgtccacagagaattacagaacaacaatggccaaggttttaagaacagaactaacatggaaaaccgagttgatgttatcgtcgaaacaat |
100 |
Q |
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| T |
5106140 |
ctcaagtatttgtccacggagaattacagaacaacaatggccaaggttttaagaacggaactaacatggaaaaccgagttgatgttatcgtcgaaacaat |
5106041 |
T |
|
| Q |
101 |
ccgaaacagacgaggatttactgaagcatgctatttgtaatgtaatggaagcacttcaaagaaacatagaatccaaacgtttgagttgtaaggacaagat |
200 |
Q |
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| T |
5106040 |
ccgaaacagacgaggatttactgaagcatgctatttgtaatgtaatggaagcacttcaaagaaacatagaatccaaacgtttgagttgtaaggacaagat |
5105941 |
T |
|
| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
5105940 |
tt |
5105939 |
T |
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