View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17447_high_4 (Length: 414)

Name: NF17447_high_4
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17447_high_4
NF17447_high_4
[»] chr1 (11 HSPs)
chr1 (15-283)||(44145602-44145870)
chr1 (16-161)||(35899837-35899982)
chr1 (16-116)||(17810899-17810999)
chr1 (16-161)||(44613460-44613605)
chr1 (16-119)||(44794733-44794836)
chr1 (15-161)||(11543673-11543819)
chr1 (192-346)||(44612834-44612983)
chr1 (347-395)||(44612764-44612812)
chr1 (360-395)||(44145567-44145602)
chr1 (192-227)||(11544222-11544257)
chr1 (192-232)||(35899529-35899569)
[»] chr5 (1 HSPs)
chr5 (16-161)||(29506765-29506910)
[»] scaffold0061 (3 HSPs)
scaffold0061 (16-161)||(28376-28521)
scaffold0061 (174-322)||(28984-29127)
scaffold0061 (348-396)||(29174-29222)
[»] scaffold0017 (4 HSPs)
scaffold0017 (16-161)||(170271-170416)
scaffold0017 (16-161)||(181358-181503)
scaffold0017 (174-322)||(169665-169808)
scaffold0017 (192-346)||(174547-174696)
[»] chr3 (5 HSPs)
chr3 (16-120)||(26729048-26729152)
chr3 (16-161)||(8343414-8343559)
chr3 (237-322)||(8342739-8342824)
chr3 (278-322)||(8342886-8342930)
chr3 (199-311)||(26728415-26728522)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 44145870 - 44145602
Alignment:
Q  15 agaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgtta 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145870 agaaggaagttgtccactcaaattatcatttcttaaaatcaaagcctccatgttagaaagggcacccattgagattggaatctttcctgacaacttgtta 44145771  T
Q  115 ttgctctgatcaacaaaccttaacgcggttaaattattccaacaatctgttaatacgcgggacaaccttagtattctcaatttggagaggttagtgaaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145770 ttgctctgatcaacaaaccttaacgcggttaaattattccaacaatcagttaatacgcgggacaaccttagtattctcaatttggagaggttagtgaaat 44145671  T
Q  215 gggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaag 283  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44145670 gggattcagagacgacacgacaccttcaagagagtttcttctcaggcccaacatctgtaattccgtaag 44145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 35899982 - 35899837
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    |||||||||||||| | ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  35899982 gaaggaagttgtccccccaaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttat 35899883  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    | ||| | |||| | |   ||| | || ||||||||||||||||||    
T  35899882 ttctcaggtcaatatattgtaatgaggataaattattccaacaatc 35899837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 17810899 - 17810999
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||| ||||  |||||||||||||||||  |||||||||||||||||||||||||    
T  17810899 gaagtaagttgtccactcaaaccattatttcttaaaatcaaagcctccatgttaacaagggcacccattgagaagggaatctttcctgacaacttgttat 17810998  T
Q  116 t 116  Q
    |    
T  17810999 t 17810999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 44613605 - 44613460
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  || | ||||| ||||||||||| ||||||||||||  | || |||||||    
T  44613605 gaaggaagttgtccactcaaactattatttcttaaaatcaaagcctccatatttgtaagggtacccattgagaatggaatctttccccataatttgttat 44613506  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    | ||    ||||||||  |||||| ||||| |||||||||||||||    
T  44613505 ttcttaagtcaacaaattttaacgaggttagattattccaacaatc 44613460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 44794733 - 44794836
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||||||||||||| ||||||||||||||| ||||   |||| | ||| ||||| ||||||||||| |||||||||||||| |||||| ||||    
T  44794733 gaaggaagttgtccactcaaactattatttcttaaaaccaaattgtccatgctagcaagggaacccattgagaatggaatctttcctgtcaacttattat 44794832  T
Q  116 tgct 119  Q
    ||||    
T  44794833 tgct 44794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 11543673 - 11543819
Alignment:
Q  15 agaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgtta 114  Q
    |||||||||||||||||||||| |||||||||||| || |||| | | || ||||  |||||||||||| || | ||| |||||||| ||||||||||||    
T  11543673 agaaggaagttgtccactcaaactattatttcttagaaccaaatcttgcatgttaacaagggcacccatcgacaatgggatctttcccgacaacttgtta 11543772  T
Q  115 ttgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    || ||  | |||||| |   || || |||||||||||||||||||||    
T  11543773 ttactgaggtcaacatagtatagcgaggttaaattattccaacaatc 11543819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 44612983 - 44612834
Alignment:
Q  192 caatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccga 291  Q
    ||||||||||||||||||||||||||||||| ||| || ||     |||||| ||||||||  | ||||   ||   |||||| || ||||| |||||||    
T  44612983 caatttggagaggttagtgaaatgggattcagagatgatac-----cttcaaaagagtttccgcccaggtacaaatactgtaactcggtaagtgatccga 44612889  T
Q  292 tgctcgtgggtatttctccaatcaatttattattaccaagaaccaacagtctcaa 346  Q
    |||||| ||||||||||||| | ||||||||   |  ||||||||||||||||||    
T  44612888 tgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtctcaa 44612834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 44612812 - 44612764
Alignment:
Q  347 tggtaacttgcccgaaatctcattattccataataatagttcctgtaac 395  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  44612812 tggtaacttgcccgaaatctcattattccatagccatagttcctgtaac 44612764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 44145602 - 44145567
Alignment:
Q  360 gaaatctcattattccataataatagttcctgtaac 395  Q
    ||||||||||||||||||||||||||||||||||||    
T  44145602 gaaatctcattattccataataatagttcctgtaac 44145567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 11544222 - 11544257
Alignment:
Q  192 caatttggagaggttagtgaaatgggattcaaagac 227  Q
    ||||||||||||||||||||||||||||||| ||||    
T  11544222 caatttggagaggttagtgaaatgggattcagagac 11544257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 35899569 - 35899529
Alignment:
Q  192 caatttggagaggttagtgaaatgggattcaaagacgacac 232  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  35899569 caatttggagaggttagtgaaatgagattcagagatgacac 35899529  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 29506765 - 29506910
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||||||  |||  ||| ||||||||||||| ||||||||| || ||||| |||||||    
T  29506765 gaaggaaattgtccactcaaactgttatttcttaaaatcaaagcctccatattaacaagagcacccattgagaatggaatcttacccgacaagttgttat 29506864  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    ||||| | |||||||||  ||| | ||||| |||||||||||||||    
T  29506865 tgctcagttcaacaaactgtaatgaggttagattattccaacaatc 29506910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 28376 - 28521
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||  |||||||||||||||||| ||||| |||||  | || |||||||    
T  28376 gaaggaagttggccactcaaactattatttcttaaaaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttat 28475  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    ||||  | ||||||||  |||| | ||||| |||||||||||||||    
T  28476 tgctgaggtcaacaaattttaatgaggttagattattccaacaatc 28521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 322
Target Start/End: Original strand, 28984 - 29127
Alignment:
Q  174 ggacaaccttagtattctcaatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgta 273  Q
    |||||||| |||  || |||||||||||||||||||||||||||||||| |||||||||     |||||| ||||||||  ||||||   ||  ||| ||    
T  28984 ggacaaccatagccttttcaatttggagaggttagtgaaatgggattcagagacgacac-----cttcaaaagagtttcggctcaggtacaaactcttta 29078  T
Q  274 attccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 322  Q
    | || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  29079 actctgtaagtgatccgatgctcgtgggtatttctccaattaatttatt 29127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 29174 - 29222
Alignment:
Q  348 ggtaacttgcccgaaatctcattattccataataatagttcctgtaaca 396  Q
    |||||| |||| ||||||||||||||| ||||  |||||||||||||||    
T  29174 ggtaacatgcctgaaatctcattattcgataaccatagttcctgtaaca 29222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 170416 - 170271
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||  |||||||||||||||||| ||||| |||||  | || |||||||    
T  170416 gaaggaagttggccactcaaactattatttcttaaaaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttat 170317  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    ||||  | ||||||||  |||| | ||||| |||||||||||||||    
T  170316 tgctgaggtcaacaaattttaatgaggttagattattccaacaatc 170271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 181503 - 181358
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||| ||||||| | ||||||||||||||| |||| ||||||  || | ||||| |||||||||||  ||||||||||| |||||||||||||    
T  181503 gaaggaagttgaccactcatactattatttcttaaaaccaaaacctccatatttgtaagggtacccattgagaagggaatctttccggacaacttgttat 181404  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    ||||| |||||||| |   ||| | |||||||| ||||||||||||    
T  181403 tgctcagatcaacatattgtaatgaggttaaatcattccaacaatc 181358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 322
Target Start/End: Complemental strand, 169808 - 169665
Alignment:
Q  174 ggacaaccttagtattctcaatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgta 273  Q
    |||||||| |||  || |||||||||||||||||||||||||||||||| |||||||||     |||||| ||||||||  ||||||   ||  ||| ||    
T  169808 ggacaaccatagccttttcaatttggagaggttagtgaaatgggattcagagacgacac-----cttcaaaagagtttcggctcaggtacaaactcttta 169714  T
Q  274 attccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 322  Q
    | || ||||| ||||||||||||||||||||||||||||| ||||||||    
T  169713 actctgtaagtgatccgatgctcgtgggtatttctccaattaatttatt 169665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 174696 - 174547
Alignment:
Q  192 caatttggagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccga 291  Q
    |||||||||||||||||||||||| ||||||     || || |||||||||| ||||||||| ||||| |  ||  ||||||| ||| | ||||||||||    
T  174696 caatttggagaggttagtgaaatgcgattca-----gagacaacaccttcaaaagagtttctgctcagactcaatgtctgtaactccatgagcgatccga 174602  T
Q  292 tgctcgtgggtatttctccaatcaatttattattaccaagaaccaacagtctcaa 346  Q
    |||| ||| ||||||||||||| |||||||||| | |||||  |||| |||||||    
T  174601 tgctagtgtgtatttctccaattaatttattatcagcaagatacaactgtctcaa 174547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 26729152 - 26729048
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| | ||||  ||| ||||||||||||  |||||| |||||  ||||||||||||    
T  26729152 gaagtaagttgtccactcaaactattatttcttaaaatcaaagcctctatgttaacaagagcacccattgaggatggaatatttccccacaacttgttat 26729053  T
Q  116 tgctc 120  Q
    |||||    
T  26729052 tgctc 26729048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 8343559 - 8343414
Alignment:
Q  16 gaaggaagttgtccactcaaattattatttcttaaaatcaaagcctccaagttagaaagggcacccattgagattggaatctttcctgacaacttgttat 115  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||| || |  || | || |  ||||||||||| |||||||||||| |||||||||||||    
T  8343559 gaaggaagttgtccactcaaactattacttcttaaaattaaagcttcgatatttggaacgttacccattgagaatggaatctttcccgacaacttgttat 8343460  T
Q  116 tgctctgatcaacaaaccttaacgcggttaaattattccaacaatc 161  Q
    | ||  | |||| | |   ||| | |||||||||||||||||||||    
T  8343459 tactaaggtcaagatagtataatgaggttaaattattccaacaatc 8343414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 8342824 - 8342739
Alignment:
Q  237 ccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 322  Q
    ||||||| ||||||||| | |||||  || | || ||| || |||||||| |||||||||||||||||||||||||| ||||||||    
T  8342824 ccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaagcgacccgatgctcgtgggtatttctccaattaatttatt 8342739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 8342930 - 8342886
Alignment:
Q  278 cgtaagcgatccgatgctcgtgggtatttctccaatcaatttatt 322  Q
    |||||| ||||||||||||||||||||||||||||| | ||||||    
T  8342930 cgtaagtgatccgatgctcgtgggtatttctccaattagtttatt 8342886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 26728522 - 26728415
Alignment:
Q  199 gagaggttagtgaaatgggattcaaagacgacacgacaccttcaagagagtttcttctcaggcctaacatctgtaattccgtaagcgatccgatgctcgt 298  Q
    ||||||||||||||||||||||||     || ||||||||||||| |||||||  || |||| | || |||| ||| |||||||| ||||| ||||| |     
T  26728522 gagaggttagtgaaatgggattca-----gagacgacaccttcaaaagagtttactcccaggtccaaaatctctaaatccgtaagtgatcccatgcttgc 26728428  T
Q  299 gggtatttctcca 311  Q
     ||||||||||||    
T  26728427 aggtatttctcca 26728415  T

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