View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17447_high_9 (Length: 298)

Name: NF17447_high_9
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17447_high_9
NF17447_high_9
[»] chr3 (1 HSPs)
chr3 (1-292)||(29574953-29575244)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29575244 - 29574953
Alignment:
Q  1 ctctttgactcttcttcctatttcataaataaaccgactgaaaattcaatttaaatactgtgaaattcctctacaaatctgtctcttagtgatggaaaaa 100  Q
    |||||| |||||||||||| |||||||||||||  || |||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||    
T  29575244 ctctttaactcttcttcctgtttcataaataaaaagaatgaaaattaaatataaagaatgtgaaattcctctacaaatctgtctcttagtgatggaaaaa 29575145  T
Q  101 tcgatgaccattaatttataaatgaactagattgaataaaattaatttagtttaaattgaagtgattgtaatttatatattttactttaaaagccagctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29575144 tcgatgaccattaatttataaatgaactagattgaataaaattaatttagtttaaattgaagtgattgtaatttatatattttactttaaaagccagctt 29575045  T
Q  201 gatgtactcaatnnnnnnntcgacataacaacatagcaactactttttatatcattcctagtcaaattgagatgcacaagcaaaatagtttt 292  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29575044 gatgtactcaataaaaaaatcgacataacaacatagcaactactttttatatcattcctagtcaaattgagatgcacaagcaaaatagtttt 29574953  T

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