View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17447_low_1 (Length: 634)

Name: NF17447_low_1
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17447_low_1
NF17447_low_1
[»] chr5 (5 HSPs)
chr5 (1-612)||(41718154-41718764)
chr5 (40-614)||(41722878-41723451)
chr5 (40-378)||(34359934-34360271)
chr5 (40-378)||(29585302-29585640)
chr5 (57-378)||(34352226-34352546)
[»] chr4 (15 HSPs)
chr4 (1-446)||(48701784-48702228)
chr4 (1-376)||(42265883-42266257)
chr4 (40-446)||(48697133-48697539)
chr4 (40-376)||(42270602-42270937)
chr4 (44-377)||(24520031-24520363)
chr4 (1-446)||(30950146-30950607)
chr4 (40-446)||(30945479-30945901)
chr4 (40-329)||(10427315-10427595)
chr4 (51-246)||(48782850-48783031)
chr4 (162-290)||(1979253-1979375)
chr4 (91-189)||(17248015-17248112)
chr4 (40-117)||(36615361-36615438)
chr4 (49-117)||(30165900-30165968)
chr4 (104-142)||(1979567-1979604)
chr4 (469-562)||(48781266-48781360)
[»] chr3 (11 HSPs)
chr3 (1-377)||(5823238-5823613)
chr3 (40-378)||(5818515-5818852)
chr3 (1-446)||(2817226-2817658)
chr3 (40-335)||(54545902-54546198)
chr3 (40-191)||(24659138-24659287)
chr3 (46-152)||(4579254-4579360)
chr3 (52-224)||(31204781-31204950)
chr3 (191-329)||(24671173-24671301)
chr3 (76-233)||(35977103-35977258)
chr3 (204-329)||(4579126-4579241)
chr3 (26-82)||(25877086-25877142)
[»] chr8 (3 HSPs)
chr8 (1-377)||(9444055-9444430)
chr8 (40-377)||(9439374-9439710)
chr8 (55-111)||(4799315-4799371)
[»] chr2 (15 HSPs)
chr2 (47-446)||(5198664-5199062)
chr2 (1-327)||(15602905-15603231)
chr2 (1-201)||(825632-825833)
chr2 (40-201)||(830288-830450)
chr2 (45-305)||(28715816-28716070)
chr2 (36-329)||(30396909-30397191)
chr2 (251-335)||(830205-830291)
chr2 (251-335)||(825549-825635)
chr2 (107-258)||(13843865-13844014)
chr2 (51-198)||(31592923-31593068)
chr2 (133-260)||(8004167-8004292)
chr2 (43-260)||(13840245-13840456)
chr2 (58-173)||(12175768-12175881)
chr2 (53-102)||(9358158-9358207)
chr2 (99-208)||(42117769-42117876)
[»] chr6 (10 HSPs)
chr6 (1-446)||(27878672-27879134)
chr6 (40-378)||(26976133-26976470)
chr6 (40-377)||(1234680-1235016)
chr6 (40-376)||(27873992-27874327)
chr6 (40-329)||(18967912-18968192)
chr6 (40-313)||(30986552-30986827)
chr6 (84-326)||(30966683-30966923)
chr6 (43-229)||(21966677-21966860)
chr6 (1-89)||(30967674-30967762)
chr6 (57-206)||(23012520-23012667)
[»] chr7 (6 HSPs)
chr7 (43-329)||(16183636-16183913)
chr7 (43-335)||(30235038-30235334)
chr7 (14-260)||(8139940-8140183)
chr7 (14-224)||(8138436-8138645)
chr7 (51-196)||(5102606-5102749)
chr7 (43-153)||(36528420-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (40-329)||(27228-27508)
[»] chr1 (4 HSPs)
chr1 (40-329)||(46191266-46191544)
chr1 (43-224)||(30697120-30697300)
chr1 (40-224)||(4130215-4130399)
chr1 (180-260)||(30674787-30674865)


Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 41718764 - 41718154
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718764 cggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 41718665  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718664 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 41718565  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41718564 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 41718465  T
Q  301 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatg 400  Q
     |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718464 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatg 41718366  T
Q  401 ctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcacc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718365 ctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcacc 41718266  T
Q  501 gaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttca 600  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718265 gaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttca 41718166  T
Q  601 cacatgttcaca 612  Q
    ||||||||||||    
T  41718165 cacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 40 - 614
Target Start/End: Complemental strand, 41723451 - 41722878
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723451 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 41723352  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  41723351 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct 41723252  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  41723251 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca 41723153  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccatttt 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723152 agctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccatttt 41723053  T
Q  440 catttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaa 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41723052 catttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaa 41722953  T
Q  540 catgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722952 catgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaat 41722878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 40 - 378
Target Start/End: Complemental strand, 34360271 - 34359934
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34360271 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaa 34360172  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34360171 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct 34360072  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34360071 ctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaaca 34359973  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatga 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34359972 agctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 40 - 378
Target Start/End: Original strand, 29585302 - 29585640
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585302 ttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 29585401  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29585402 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactct 29585501  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  29585502 ctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagaca 29585601  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatga 378  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  29585602 agctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 57 - 378
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  57 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  157 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggaga 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  257 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttg 356  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttg 34352248  T
Q  357 tgttgttactgatttgggatga 378  Q
    ||||||||||||||||||||||    
T  34352247 tgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 48701784 - 48702228
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701784 cggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 48701883  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701884 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 48701983  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48701984 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 48702083  T
Q  301 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatg 400  Q
     |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702084 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatg 48702182  T
Q  401 ctatttataggaccgtaaaagccatgcctcaaccattttcatttat 446  Q
    |||||||||  |  | || ||||||||| |||||| || |||||||    
T  48702183 ctatttatactagtgaaagagccatgccccaaccaattgcatttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 42266257 - 42265883
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266257 cggaataacagctacgaaccagcggctctgataccactgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 42266158  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266157 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 42266058  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42266057 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagcta 42265958  T
Q  301 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggat 376  Q
     |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42265957 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 40 - 446
Target Start/End: Original strand, 48697133 - 48697539
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697133 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 48697232  T
Q  140 taaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactc 238  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  48697233 taaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactc 48697332  T
Q  239 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaac 338  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  48697333 tctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaac 48697431  T
Q  339 aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattt 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| |||||| ||    
T  48697432 aagctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaatt 48697531  T
Q  439 tcatttat 446  Q
     |||||||    
T  48697532 gcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 40 - 376
Target Start/End: Complemental strand, 42270937 - 42270602
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270937 ttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 42270838  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270837 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 42270738  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||    
T  42270737 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaaca 42270639  T
Q  340 agctttacttgttcttgtgttgttactgatttgggat 376  Q
    |||||||||||||||||||||||||||||||||||||    
T  42270638 agctttacttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 44 - 377
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
Q  44 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 143  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  144 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct 24520230  T
Q  244 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 343  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  24520231 tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagct 24520329  T
Q  344 ttacttgttcttgtgttgttactgatttgggatg 377  Q
    ||||||||||||||||||||||||||||||||||    
T  24520330 ttacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 30950146 - 30950607
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  30950146 cggaataacagctacgaaccaggagctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaa 30950245  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30950246 ctgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaga 30950344  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 298  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  30950345 acctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 30950444  T
Q  299 taatttttctctctatattttttctctcactactcta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtaga 383  Q
    |||||||||||||||||||||| ||||| ||| ||||     |||||         |  |||| ||||| | ||||||||||| ||||||||||||||||    
T  30950445 taatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtaga 30950544  T
Q  384 atggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 446  Q
    ||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  30950545 atggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 40 - 446
Target Start/End: Original strand, 30945479 - 30945901
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945479 ttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 30945578  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30945579 taaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactct 30945677  T
Q  240 ctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-- 335  Q
    |||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||      
T  30945678 ctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctact 30945777  T
Q  336 ---aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagc 422  Q
       |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||    
T  30945778 aagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagc 30945877  T
Q  423 catgcctcaaccattttcatttat 446  Q
    |||||| |||||| || |||||||    
T  30945878 catgccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 40 - 329
Target Start/End: Complemental strand, 10427595 - 10427315
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10427595 ttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaa 10427496  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc 238  Q
    |||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |||    
T  10427495 taaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctc 10427397  T
Q  239 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
    ||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427396 tctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  51 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 150  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||| |||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatattt-acgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  151 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 246  Q
    |  || ||||         ||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782932 a--catgggg---------agaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  162 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 261  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  262 aactaacacaaactaggagaaacctcaca 290  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  91 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 189  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 117  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  49 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 117  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  104 aacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 562
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
Q  469 gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa 562  Q
    ||||||||||||||||||| ||| |  ||||| ||||| | |||| ||||| |||||  ||||||| ||||||||  | |||||||||||||||||    
T  48781360 gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa 48781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 5823238 - 5823613
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823238 cggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 5823337  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823338 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 5823437  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5823438 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 5823537  T
Q  301 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg 377  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5823538 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 40 - 378
Target Start/End: Original strand, 5818515 - 5818852
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5818515 ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaa 5818614  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5818615 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct 5818714  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  5818715 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca 5818813  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatga 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5818814 agctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 2817226 - 2817658
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||| ||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2817226 cggaataacaactacgaaccagcggctttgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaa 2817325  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |    
T  2817326 ctgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaag 2817424  T
Q  201 acctctctctaaatacaaggagagtacaattacca--ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaac 298  Q
    | |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||| |||||||              |||||||||    
T  2817425 aactctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatactaactaatacaaact--------------aggagaaac 2817510  T
Q  299 taatttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggaca 398  Q
    || |||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817511 tatttttcctctctatattttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggaca 2817610  T
Q  399 tgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 446  Q
    |||||| ||||  |  | || ||||||||| |||||| || |||||||    
T  2817611 tgctatgtatactagtgaaagagccatgccccaaccaattgcatttat 2817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 40 - 335
Target Start/End: Complemental strand, 54546198 - 54545902
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  54546198 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaa 54546100  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54546099 taaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactct 54546000  T
Q  240 ctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 335  Q
    |||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  54545999 ctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 54545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 24659138 - 24659287
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24659138 ttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaa 24659237  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 191  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659238 taaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  46 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 145  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  146 gaaaaaa 152  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  52 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 151  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  152 accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 224  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 329
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  191 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 290  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  291 ggagaaactaatttttctctctatattttttctctcact 329  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  76 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 174  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  175 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 233  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 329
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  204 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 303  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  304 tttctctctatattttttctctcact 329  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  26 ctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataa 82  Q
    ||||||||||||| |||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 9444055 - 9444430
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444055 cggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 9444154  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444155 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 9444254  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9444255 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 9444354  T
Q  301 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgatttgggatg 377  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9444355 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 40 - 377
Target Start/End: Original strand, 9439374 - 9439710
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439374 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 9439473  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9439474 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct 9439573  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  9439574 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca 9439672  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatg 377  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9439673 agctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  55 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 111  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 47 - 446
Target Start/End: Original strand, 5198664 - 5199062
Alignment:
Q  47 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  147 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat 5198863  T
Q  247 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 346  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  5198864 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta 5198962  T
Q  347 cttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  5198963 cttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 15603231 - 15602905
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    ||||||||||  |||||||||| | |||||||| |||| || |||   ||||||| ||||||||||||||||  | ||||||||||||||||||||||||    
T  15603231 cggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaa 15603132  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  15603131 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaag 15603032  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 300  Q
    |||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||||| |||||||||  |||| ||||||||||| || | || |||    
T  15603031 acctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatactaactaacacttactaagagaaacctcatagaaaaatcta 15602932  T
Q  301 atttttctctctatattttttctctca 327  Q
    |||||||| ||||||||||| ||||||    
T  15602931 atttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 825833 - 825632
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825833 cggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 825734  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacag 199  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825733 ctgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacag 825634  T
Q  200 ga 201  Q
    ||    
T  825633 ga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 830450 - 830288
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830450 ttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 830351  T
Q  140 taaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 201  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830350 taaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 45 - 305
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
Q  45 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 144  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg 28715972  T
Q  145 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt 244  Q
    ||||||| ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |    
T  28715971 ggaaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct 28715873  T
Q  245 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt 305  Q
    ||||||||||||||    |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715872 ataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 36 - 329
Target Start/End: Original strand, 30396909 - 30397191
Alignment:
Q  36 actattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 135  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||    
T  30396909 actattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaa 30397006  T
Q  136 caaataaggggaaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 234  Q
    |||||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   |||||||    
T  30397007 caaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc 30397106  T
Q  235 actctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
     |||| | ||  |||||||||||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397107 -ctctatgtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
Q  251 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 335  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
Q  251 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 335  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta 825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
Q  107 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 206  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  207 ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 258  Q
     | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843963 ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 31592923 - 31593068
Alignment:
Q  51 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 150  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |||||| |  ||||    
T  31592923 agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaa 31593021  T
Q  151 aaccacggggcaagagtagagaactttcactaagtggaagaaattaca 198  Q
    ||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593022 aaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  133 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 232  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  233 ccactctctcttataaataggagaatac 260  Q
     |||||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 260
Target Start/End: Original strand, 13840245 - 13840456
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  |||||||||| ||    
T  13840245 ggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaa 13840341  T
Q  143 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctc 242  Q
    |||| ||||  || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||    
T  13840342 gggggaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctc 13840438  T
Q  243 ttataaataggagaatac 260  Q
    ||| |||||  |||||||    
T  13840439 ttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  58 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 157  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  158 gggcaagagtagagaa 173  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  53 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 102  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  99 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 198  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  199 ggacctctct 208  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 27878672 - 27879134
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 100  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878672 cggaataacagctacgaaccaggggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaa 27878771  T
Q  101 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878772 ctgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagg 27878871  T
Q  201 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  27878872 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 27878971  T
Q  299 taatttttctctctatattttttctctcactactcta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtaga 383  Q
    |||||||||||||||||||||| ||||| ||| ||||     |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||    
T  27878972 taatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtaga 27879071  T
Q  384 atggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 446  Q
    ||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  27879072 atggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 40 - 378
Target Start/End: Original strand, 26976133 - 26976470
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976133 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 26976232  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26976233 taaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactct 26976332  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  26976333 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca 26976431  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatga 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26976432 agctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 40 - 377
Target Start/End: Complemental strand, 1235016 - 1234680
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235016 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 1234917  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  1234916 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactct 1234817  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  1234816 ctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaaca 1234718  T
Q  340 agctttacttgttcttgtgttgttactgatttgggatg 377  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1234717 agctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 27873992 - 27874327
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873992 ttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 27874091  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 239  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874092 taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactct 27874191  T
Q  240 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||    
T  27874192 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaaca 27874290  T
Q  340 agctttacttgttcttgtgttgttactgatttgggat 376  Q
    |||||||||||||||||||||||||||||||||||||    
T  27874291 agctttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 40 - 329
Target Start/End: Complemental strand, 18968192 - 18967912
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18968192 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaa 18968093  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc 238  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | |||    
T  18968092 taaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctc 18967994  T
Q  239 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
    |||| |  |||||||||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967993 tctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 40 - 313
Target Start/End: Complemental strand, 30986827 - 30986552
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaac 136  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||||||    
T  30986827 ttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaac 30986729  T
Q  137 aaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc 234  Q
    ||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  30986728 aaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattacc 30986629  T
Q  235 actctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 313  Q
    |||||||||| ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986628 actctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 84 - 326
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
Q  84 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  183 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa 282  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  283 acctcac-aggagaaactaatt-tttctctctatattttttctctc 326  Q
    ||||||| || |||||||| || |||||||||||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  143 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 229  Q
     |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30967762 - 30967674
Alignment:
Q  1 cggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacga 89  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30967762 cggaataacagctacgaactaaaggctctgataccactgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  57 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 155  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  156 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 206  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 329
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  143 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctct 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| ||||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct 16183834  T
Q  242 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
    |||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183835 ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 43 - 335
Target Start/End: Complemental strand, 30235334 - 30235038
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30235334 ggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataa 30235236  T
Q  143 gggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattaccactctc 240  Q
    |||| |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || ||||||||||||||||||||||||    
T  30235235 ggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctc 30235136  T
Q  241 tcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactactcta 335  Q
    ||||||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  30235135 tcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactcta 30235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
Q  14 acgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 113  Q
    ||||||||| |||||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
Q  114 attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaa 213  Q
    | |||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| ||    
T  8140040 a-tttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaa 8140138  T
Q  214 tacaaggagagtacaattaccactctctcttataaataggagaatac 260  Q
    |||||||||||   ||||||| |||||||||  ||||||||||||||    
T  8140139 tacaaggagagacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 8138436 - 8138645
Alignment:
Q  14 acgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 113  Q
    ||||||||| |||||| |||||||| || |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| |    
T  8138436 acgaaccaatggctctaataccactgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagt 8138535  T
Q  114 attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaa 213  Q
    | || | |||||||||||| |||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||    
T  8138536 aatt-atgtggaaaccccttaacaaacaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaa 8138634  T
Q  214 tacaaggagag 224  Q
    |||||||||||    
T  8138635 tacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  51 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 149  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  150 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 196  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 36528420 - 36528529
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |||||    
T  36528420 ggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataa 36528518  T
Q  143 ggggaaaaaac 153  Q
    ||  |||||||    
T  36528519 ggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 40 - 329
Target Start/End: Original strand, 27228 - 27508
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27228 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaa 27327  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||| ||    
T  27328 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tc 27426  T
Q  239 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
    ||||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27427 tctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 40 - 329
Target Start/End: Complemental strand, 46191544 - 46191266
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  46191544 ttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaa 46191447  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactc 238  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |||    
T  46191446 taaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctc 46191348  T
Q  239 tctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 329  Q
    ||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191347 tctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
Q  43 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 142  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  143 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 224  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 4130399 - 4130215
Alignment:
Q  40 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 139  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  4130399 ttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaa 4130301  T
Q  140 taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 224  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130300 taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  180 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 260  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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