View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_15 (Length: 244)
Name: NF17447_low_15
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 8375355 - 8375143
Alignment:
| Q |
14 |
gaacagctgcattaagtactgctttgtttaatgatggagcttcatgtgggcaatgctacaaaatcatttgtgattataagacagacccaagatggtgcat |
113 |
Q |
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| T |
8375355 |
gaacagctgcattaagtactgctttgtttaatgatggagcttcatgtgggcaatgctacaaaatcatttgtgattataaaacagacccaagatggtgcat |
8375256 |
T |
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| Q |
114 |
aaaaggaagatctattaccataacagccacaaatttctgtcctccaaattttgatcttccaaacgacgatggaggttggtgcaacccacctctaaagcat |
213 |
Q |
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| T |
8375255 |
aaaaggaagatctattaccataacagccacaaatttctgtcctccaaattttgatcttccaaacgacgatggaggttggtgcaacccacctctaaagcat |
8375156 |
T |
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| Q |
214 |
tttgatatggcac |
226 |
Q |
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| T |
8375155 |
tttgatatggcac |
8375143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 38165142 - 38165178
Alignment:
| Q |
15 |
aacagctgcattaagtactgctttgtttaatgatgga |
51 |
Q |
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| T |
38165142 |
aacagctgcattgagtactgctttgtttaatgatgga |
38165178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 45507088 - 45507055
Alignment:
| Q |
17 |
cagctgcattaagtactgctttgtttaatgatgg |
50 |
Q |
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| T |
45507088 |
cagctgcattgagtactgctttgtttaatgatgg |
45507055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 45512548 - 45512515
Alignment:
| Q |
17 |
cagctgcattaagtactgctttgtttaatgatgg |
50 |
Q |
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| T |
45512548 |
cagctgcattgagtactgctttgtttaatgatgg |
45512515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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