View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17447_low_2 (Length: 467)
Name: NF17447_low_2
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 48486610 - 48487053
Alignment:
| Q |
18 |
catacacaacacgaagtggaaaaattaaaatcacctggccttggcagtgatattcctgttcagcacaggaagtcgcaccctccacaatttgcttagctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486610 |
catacacaacacgaagtggaaaaattaaaatcacctggccttggcagtgatattcctgttcagcacaggaagtcgcaccctccacaatttgcttagctct |
48486709 |
T |
|
| Q |
118 |
ataatgtggatccagaatgccattatctgccaacattgcctcctccattgcctcgtgaaagtcacttcctttggtcttgtacaatcgggtctgcccctgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486710 |
ataatgtggatccagaatgccattatctgccaacattgcctcctccattgcctcgtgaaagtcacttcctttggtcttgtacaatcgggtctgcccctgg |
48486809 |
T |
|
| Q |
218 |
aatctgaacaagattattcttaatatgagcgaatacaagccaaatattcttgcaggcagaacaacaaccaaaat--cacacacaaacacaaacctatcca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48486810 |
aatctgaacaagattattcttaatatgagcgagtacaagccaaatattcttgcaggcagaacaacaaccaaaatcacacacacaaacacaaacctatcca |
48486909 |
T |
|
| Q |
316 |
tgaattccaagaaggggaataccatcccctgcttcgcccatgcatagtcctgccaagtgcccatcacaaattcattagatttcaacaataacaacaactc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48486910 |
tgaattccaagaaggggaataccatcccctgcttcgcccatgcatagtcctgccaagtgcccatcacaaattcattagatttcaacaataacaacaactc |
48487009 |
T |
|
| Q |
416 |
aaacctttacataaaggtgtgttgagaagagcttaccctatgct |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48487010 |
aaacctttacataaaggtgtgttgagaagagcttaccctgtgct |
48487053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University