View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_20 (Length: 201)
Name: NF17447_low_20
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 7908633 - 7908831
Alignment:
| Q |
3 |
catgtccaagaatatcttgctttcacaatttcccaacacatataggactcaaaatataactttcatggtacnnnnnnnnncaaattgagggttctttcaa |
102 |
Q |
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| T |
7908633 |
catgtccaa-aatatcttgctttcacaatttcccaacacatataggactcaaaatataactttcatggtacaaaaaaaaacaaattgagggttctttcaa |
7908731 |
T |
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| Q |
103 |
ccaagnnnnnnntatatctaattttgagatgacccatgtgaataaaatttag-nnnnnnngggtggttagaatagaaacagagacggtgtagaaagaaaa |
201 |
Q |
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| T |
7908732 |
ccatgaaaaaaatatatctaattttgagatgacccatgtgaataaaatttagaaaaaaaagggtggttagaatagaaacagagacggtgtagaaagaaaa |
7908831 |
T |
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