View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_3 (Length: 425)
Name: NF17447_low_3
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 19423466 - 19423875
Alignment:
| Q |
1 |
gcagtgtagcggggactagcttatcatcagcaccttgccatagatgaactttgatagtattatctggaaaagggttgtcaagatcaagtggatcaaaatc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19423466 |
gcagcgtagcggggactagcttatcatcagcaccttgccatagatgaactttgattgtattatctgaaaaagggttgtcaagatcaagtggatcaaaatc |
19423565 |
T |
|
| Q |
101 |
ccaagttccaaatccaattatcgtgtcacggcatatagattcatgctcaccttgttgtttcacttgtgactgcattaaattaagtagtcgttcgatcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19423566 |
ccaagttccaaatccaattatcgtgtcacggcatatagattcatgctcaccttgttgtttcacttgtgactgcattaaattaagtagtcgttcgatcagt |
19423665 |
T |
|
| Q |
201 |
ataaagatattttacactgtcgatcaatcataatcgtaagattatatatataaactagtacagtacgtacccgatgttctttgttaacagacatgttgaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19423666 |
ataaagatattttacactgttgatcaatcataatcgtaagattatatatataaattagtacagtacgtacccgatgttctttgttaacagacatgttgaa |
19423765 |
T |
|
| Q |
301 |
aacaattgataaatcttggggagacaaaacagcagaattgccttttactacacttgatgtaggaaaccagttttgagtgaaccaccagaatgtaagccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19423766 |
aacaattgataaatcttggggagacaaaacagcagaattgccttttactacacttgatgtaggaaaccagttttgagtgaaccaccagaatgtaagccat |
19423865 |
T |
|
| Q |
401 |
ggaacataat |
410 |
Q |
| |
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|||||||||| |
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| T |
19423866 |
ggaacataat |
19423875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 7601482 - 7601440
Alignment:
| Q |
195 |
atcagtataaagatattttacactgtcgatcaatcataatcgt |
237 |
Q |
| |
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|||||| ||||||| |||||||||||| ||||||||||||||| |
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| T |
7601482 |
atcagtgtaaagattttttacactgtcaatcaatcataatcgt |
7601440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 36886000 - 36886042
Alignment:
| Q |
195 |
atcagtataaagatattttacactgtcgatcaatcataatcgt |
237 |
Q |
| |
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|||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
36886000 |
atcagtgtaaagatattttacactatcaatcaatcataatcgt |
36886042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 16962155 - 16962191
Alignment:
| Q |
196 |
tcagtataaagatattttacactgtcgatcaatcata |
232 |
Q |
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||||||||||| | ||||||||||||||||||||||| |
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| T |
16962155 |
tcagtataaagtttttttacactgtcgatcaatcata |
16962191 |
T |
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