View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_5 (Length: 368)
Name: NF17447_low_5
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 405337 - 405088
Alignment:
| Q |
1 |
aacttataataatctttgccctcaattccattccaaccaaacagacctaattaaaatgattgttcaaaacatgcacttatgtctacattcttgaacatgt |
100 |
Q |
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| T |
405337 |
aacttataataatctttgccctcaattccattccaaccaaacagacctaattaaaatgattgttcaaaacatgcacttatgtctacattcttgaacatgt |
405238 |
T |
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| Q |
101 |
ttgttatttgtctttaaggatccttcatccacatttcaaaaatg--------accaaaagcttgtctgcatatgcctactacaccaccctttacaattaa |
192 |
Q |
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| T |
405237 |
ttgttatttgtc-ttaaggatccttcatccacatttcaaaaatgaccaaaaaaccaaaagcttgtctgcatatgcctactacaccaccctttacaattaa |
405139 |
T |
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| Q |
193 |
gaagaaatttcctattcacgggttctacataactaagaaaaactgggtatt |
243 |
Q |
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| T |
405138 |
gaagaaatttcctattcacgggttctacataactaagaaaaactgggtatt |
405088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 405087 - 405033
Alignment:
| Q |
268 |
atgcaatgcaaatagatattctaagcatatatcgggccagacgaaagaaccactaca |
324 |
Q |
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| T |
405087 |
atgcaatgcaactagatattctaagcatat--cgggccagacgaaagaaccactaca |
405033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 1404457 - 1404359
Alignment:
| Q |
145 |
accaaaagcttgtctgcatatgcctactacaccaccctttacaattaagaagaaatttcctattcacgggttctacataactaagaaaaactgggtatt |
243 |
Q |
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| T |
1404457 |
accaaaagcttattttcctatgcctattgcaccaccctttaaaattaggaagaaacttcccattcatggttgctacattactaagaaaagctggatatt |
1404359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 45809537 - 45809635
Alignment:
| Q |
145 |
accaaaagcttgtctgcatatgcctactacaccaccctttacaattaagaagaaatttcctattcacgggttctacataactaagaaaaactgggtatt |
243 |
Q |
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||||||||||| ||||| |||||||||| ||| |||||||| ||||| ||||||| || | ||||| || | |||||| |||||||||| ||||||||| |
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| T |
45809537 |
accaaaagcttatctgcctatgcctactgcactaccctttaaaattaggaagaaactttccattcatggttgctacatcactaagaaaagctgggtatt |
45809635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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