View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_8 (Length: 324)
Name: NF17447_low_8
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_8 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 895710 - 895419
Alignment:
| Q |
11 |
aagaaaataagcaacactcacttgttacaaaaccatttacattacaacaaatcaaataaacacatctcacaaattatctttctttttctataatcactta |
110 |
Q |
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||||||||||||||||||||||||||||||||| || | || |||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
895710 |
aagaaaataagcaacactcacttgttacaaaacaatcttca--acaaattattaaata--cacatctcacaaattatctttctttttctataatcactta |
895615 |
T |
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| Q |
111 |
tctcaacttttatgcacattatgaacaaaaaatcatgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
895614 |
tctcaacttttatgcacattatgaacaaaaaaccatgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaaca |
895515 |
T |
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| Q |
211 |
attacttcaacatcacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacaatcttcc |
306 |
Q |
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| T |
895514 |
attacttcaacatcacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaacaatcttcc |
895419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 96 - 306
Target Start/End: Original strand, 905011 - 905221
Alignment:
| Q |
96 |
ttctataatcacttatctcaacttttatgcacattatgaacaaaaaatcatgcattgctatggttccttcccctggactaagccatttaattccacaagt |
195 |
Q |
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| T |
905011 |
ttctataatcacttatctcaacttctatacacatcatgaataaaaaaacatacattgctatggttccttcccctggacttagccatttaattccacaagt |
905110 |
T |
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| Q |
196 |
tgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttg |
295 |
Q |
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| T |
905111 |
tgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttg |
905210 |
T |
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| Q |
296 |
aacaatcttcc |
306 |
Q |
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|||| |||||| |
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| T |
905211 |
aacactcttcc |
905221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 343 - 498
Alignment:
| Q |
144 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
243 |
Q |
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|||||||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||| |
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| T |
343 |
catgcattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcac |
442 |
T |
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| Q |
244 |
attcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
299 |
Q |
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|||| ||||||| |||||| |||| || |||||||| |||||| | ||||||||| |
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| T |
443 |
attcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaaca |
498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 33256225 - 33256380
Alignment:
| Q |
144 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
243 |
Q |
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|||||||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||| |
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| T |
33256225 |
catgcattgctatggttccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcac |
33256324 |
T |
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| Q |
244 |
attcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
299 |
Q |
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|||| ||||||| |||||| |||| || |||||||| |||||| | ||||||||| |
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| T |
33256325 |
attcctcattcccacacttggtccactaactccttccatgcaatcaatcttgaaca |
33256380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 8295530 - 8295388
Alignment:
| Q |
144 |
catgcattgctatggttccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcac |
243 |
Q |
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|||||||||||||||||||||| |||||| | |||||||| ||||||| |||||| ||||| |||| |||||| ||| |||||||||||| | | |||| |
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| T |
8295530 |
catgcattgctatggttccttcacctggattgagccatttgattccactagttgagtttgctaaactattactccaaaatcacaatgaataccatatcac |
8295431 |
T |
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| Q |
244 |
attcatcattccaacactttgtcctcttactccttcaatgcaa |
286 |
Q |
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| T |
8295430 |
attcctcattcccacacttggtccactaactccttccatgcaa |
8295388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 6440492 - 6440567
Alignment:
| Q |
224 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
299 |
Q |
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|||||||| ||||||||||||||| || |||||||| || ||| ||| |||||||||||| | ||||| ||||||| |
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| T |
6440492 |
cacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaaca |
6440567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 34765317 - 34765242
Alignment:
| Q |
224 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
299 |
Q |
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| T |
34765317 |
cacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaaca |
34765242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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