View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17447_low_9 (Length: 303)
Name: NF17447_low_9
Description: NF17447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17447_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 4687878 - 4687593
Alignment:
| Q |
18 |
tgtttgcttcattaagaatacaactaaggaatgatgattgatgagtgctggtgctattacaaggaagaatcaatcagcagattttcctattctaaaaaat |
117 |
Q |
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| T |
4687878 |
tgtttgcttcattaagaatacaactaaggaatgatgattgatgagtgctagtgctattacaaggaagaatcaatcagcagattttcctattctaaaaaat |
4687779 |
T |
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| Q |
118 |
aaaggtaattatgccaacatgtattttattacataatgaatagatattatttgaaccagattggtgttggaagaattggtaacaatgacaaattcctaac |
217 |
Q |
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| T |
4687778 |
aaaggtaattatgccaacatgtattttattacataatgaatagatattatgtgaaccagattggtgttggaagaattggtaacaatgacaaattcctaac |
4687679 |
T |
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| Q |
218 |
caaactattggatgattaatataatctgcaactatagtgtgactttcacaataatatataatccatgcatattttactaatttaat |
303 |
Q |
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| T |
4687678 |
caaactattggatgattaatataatctgcaactatagtgtgactttcacaataatatataatccatgcatattttactaatttaat |
4687593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 4678919 - 4678838
Alignment:
| Q |
218 |
caaactattggatgattaatataatctgcaactatagtgtgactttcacaataatatataatccatgcatattttactaatt |
299 |
Q |
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| T |
4678919 |
caaaccattggatgattaatataatcagcaactatcgagtgactttcacaataatttataattcatgcatattttactaatt |
4678838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 4699113 - 4699060
Alignment:
| Q |
223 |
tattggatgattaatataatctgcaactatagtgtgactttcacaataatatat |
276 |
Q |
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| T |
4699113 |
tattggattattaatgtaatcagcaactatcgagtgactttcacactaatatat |
4699060 |
T |
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