View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17448_high_1 (Length: 300)
Name: NF17448_high_1
Description: NF17448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17448_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 21153567 - 21153284
Alignment:
| Q |
1 |
gtaactttgtttttattagaggaattgaccaaaataccaccatgttctattggtttcttcacttggaattcggaaatcgcaattggtttatttgattgtt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21153567 |
gtaactttgtttttattagaggaaatgaccaaaataccaccatattctattggtttcttcacttggaattcggaaatcgcaattggtttgtttgattgtt |
21153468 |
T |
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| Q |
101 |
tgaattgctatgaatttggaatgtgtcaaataggttttacactgattcaatggttaaactttcatattgatgtttctaactcattgtttcattacaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
21153467 |
tgaattgctatgaatttggaatgtgtcaaataggttttacactgatacaatggttaaactttcttattgatgtttctaactcattgtttcattacaaagt |
21153368 |
T |
|
| Q |
201 |
ttcaattcaacgtgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgttgtt |
284 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21153367 |
ttcaattcaacatgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgatgtt |
21153284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 21164507 - 21164224
Alignment:
| Q |
1 |
gtaactttgtttttattagaggaattgaccaaaataccaccatgttctattggtttcttcacttggaattcggaaatcgcaattggtttatttgattgtt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21164507 |
gtaactttgtttttattagaggaaatgaccaaaataccgccatgttctattggtttcttcacttggaattcggaaatcgcaattgatttatttgattgtt |
21164408 |
T |
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| Q |
101 |
tgaattgctatgaatttggaatgtgtcaaataggttttacactgattcaatggttaaactttcatattgatgtttctaactcattgtttcattacaaggt |
200 |
Q |
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| T |
21164407 |
ttaattgctatgaatttggaatgtgtcaaatagattttacagtgattcaatggttaaactttcatattgatgtttctaactcattgtctcattacaaggt |
21164308 |
T |
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| Q |
201 |
ttcaattcaacgtgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgttgtt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21164307 |
ttcaattcaacgtgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgatgtt |
21164224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 21160702 - 21160419
Alignment:
| Q |
1 |
gtaactttgtttttattagaggaattgaccaaaataccaccatgttctattggtttcttcacttggaattcggaaatcgcaattggtttatttgattgtt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21160702 |
gtaactttgtttttattagaggaaatgaccaaaataccaccatattctattggtttcttcacttggaattcggaaatcgcaattggtttgtttgattgtt |
21160603 |
T |
|
| Q |
101 |
tgaattgctatgaatttggaatgtgtcaaataggttttacactgattcaatggttaaactttcatattgatgtttctaactcattgtttcattacaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| || |
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| T |
21160602 |
tgaattgctatgaatttggaatgtgtcaaataggttttacactgatacaatggttaaactttcttattgatgtttctaattcattgtttcattacaaagt |
21160503 |
T |
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| Q |
201 |
ttcaattcaacgtgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgttgtt |
284 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21160502 |
ttcaattcaacatgtgaatttcaatgttttaattcaaaatttcttattgatgtttcaattaaaatgcactttattaatgatgtt |
21160419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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