View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17448_high_2 (Length: 411)
Name: NF17448_high_2
Description: NF17448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17448_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 26 - 380
Target Start/End: Original strand, 3214958 - 3215311
Alignment:
| Q |
26 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
|
| Q |
126 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
225 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
3215157 |
T |
|
| Q |
226 |
tctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagc |
325 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
3215158 |
tctataagattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagc |
3215256 |
T |
|
| Q |
326 |
atctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
380 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215257 |
atttgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 25 - 380
Target Start/End: Original strand, 32460471 - 32460826
Alignment:
| Q |
25 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
124 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || |||||| ||||| || || | |
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| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
|
| Q |
125 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagat |
223 |
Q |
| |
|
||||||| || || ||||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | ||||||||| |
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| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagat |
32460670 |
T |
|
| Q |
224 |
tgtctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaa |
323 |
Q |
| |
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| || || | ||||||| | |||| |||| ||| ||||||||||||||||||| || |||| |||| ||||||||| | || |||||||||||| |
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| T |
32460671 |
tatcaattaaattgcgaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcac |
32460769 |
T |
|
| Q |
324 |
gcatctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
380 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
32460770 |
gcatctgcttgtgaaaataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 375
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
43 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
142 |
Q |
| |
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|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
143 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
242 |
Q |
| |
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||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || || || ||||| || | ||||| ||| | |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
|
| Q |
243 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
342 |
Q |
| |
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||||| ||||| || ||||||||| |||| ||| || |||| |||| |||||||| || |||| | ||||| ||| ||||||| || |||||||| |
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| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
|
| Q |
343 |
ggtcacaagtttgttctagagtttatacgcatg |
375 |
Q |
| |
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| ||||||||| | | | |||| ||||||||| |
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| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
43 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
116 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
43 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
142 |
Q |
| |
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|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
143 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
199 |
Q |
| |
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||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
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|
| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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