View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17448_high_5 (Length: 365)
Name: NF17448_high_5
Description: NF17448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17448_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33342935 - 33342756
Alignment:
| Q |
1 |
atcttgacttgttcgttaccattggtcacacactccatgaaggtaatagatgtattgacttcttaacaaatcttggtgattcttcaacctcgaagatttt |
100 |
Q |
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| T |
33342935 |
atcttgacttgttagttaccattggtcacacactccatgaaggtaatagatgtattgacttcttaacaaatcttgatgattcttcaacctcgaagatttt |
33342836 |
T |
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| Q |
101 |
gatctatatatcttctgagtcaaacttatcggacctcctctttgtagattctacataaacttggttccgtagattgtagt |
180 |
Q |
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| T |
33342835 |
gatctatatattttctcagtcaaacttatcggacctcctctttgtagattcgatataaacttggttccgtagattgtagt |
33342756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 232 - 356
Target Start/End: Complemental strand, 33342704 - 33342580
Alignment:
| Q |
232 |
taaccaaaacaaagaaaatcaaaagtataattaatttcttagagcgaggaaattttgtgatttttaatcatttagatgtacgattatttttagaaatgnn |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33342704 |
taaccaaaacaaagaaaatcaaaagtataattaatttcttagagcgaggaaattttgtgatttttaatcatttagatgtacgattatttttagaaatgaa |
33342605 |
T |
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| Q |
332 |
nnnnntgtatcttccaatattcttc |
356 |
Q |
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| T |
33342604 |
aaaaatgtatcttccaatattcttc |
33342580 |
T |
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