View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17449_high_7 (Length: 222)

Name: NF17449_high_7
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17449_high_7
NF17449_high_7
[»] chr6 (14 HSPs)
chr6 (1-222)||(21150140-21150347)
chr6 (141-216)||(21181559-21181634)
chr6 (1-83)||(21219958-21220041)
chr6 (122-187)||(21352233-21352299)
chr6 (159-222)||(31106485-31106548)
chr6 (143-217)||(21267154-21267228)
chr6 (144-222)||(31094768-31094846)
chr6 (125-193)||(21190469-21190538)
chr6 (143-215)||(21136783-21136855)
chr6 (94-211)||(21147277-21147401)
chr6 (148-215)||(21233462-21233530)
chr6 (133-185)||(21313062-21313114)
chr6 (94-151)||(21184371-21184429)
chr6 (126-211)||(21279840-21279926)
[»] scaffold0016 (2 HSPs)
scaffold0016 (141-222)||(65194-65275)
scaffold0016 (108-186)||(74842-74921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (137-197)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (144-222)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (156-209)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (182-222)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21150140 - 21150347
Alignment:
Q  1 tgtgtatatggtattctttaaaacttcgaaccattcaataaatccaactgataaaggaatccatgatacaaataaatccaattgataaaaaacgagaaat 100  Q
    |||||||||||| ||||||||||| | ||||||||||||  |||||| ||||||||          | ||||||||| |||||||||||  | |||||||    
T  21150140 tgtgtatatggttttctttaaaacattgaaccattcaatggatccaattgataaagt---------tgcaaataaatacaattgataaatgaagagaaat 21150230  T
Q  101 tgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataa 199  Q
    |||||||||| |||||      ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  21150231 tgaggaaaaagttgag------aagtctaatgttaaggaagaagagaataatgaagatgctttattagatgcacatgaaacactctcacatttaacataa 21150324  T
Q  200 tcattttaaatacattatatatt 222  Q
    ||| |||||||||||||||||||    
T  21150325 tcaatttaaatacattatatatt 21150347  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 21181559 - 21181634
Alignment:
Q  141 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatta 216  Q
    |||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  21181559 aggagaataatgatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacatta 21181634  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21219958 - 21220041
Alignment:
Q  1 tgtgtatatggtattctttaaaacttcgaaccattcaataaatccaactgataaaggaatc-catgatacaaataaatccaatt 83  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||  ||| | |||||||||||||||    
T  21219958 tgtgtatatggtattctttaaaattttgaaccattcaatcaatccaattgataaaggaatctaatgttgcaaataaatccaatt 21220041  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 21352233 - 21352299
Alignment:
Q  122 aaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtca 187  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  21352233 aaagtctaatgttaaggaagtggagaatgatgaacatgttttattagatgcacataaaacattgtca 21352299  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 31106548 - 31106485
Alignment:
Q  159 ctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 222  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||    
T  31106548 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 31106485  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 21267154 - 21267228
Alignment:
Q  143 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattat 217  Q
    |||||||||||| ||| ||| |||||||||||| |||||  ||||| || |||||||||||||||||| ||||||    
T  21267154 gagaatgatgaaaatgattttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattat 21267228  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31094768 - 31094846
Alignment:
Q  144 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 222  Q
    |||||||||| ||| |||| ||||||||||||||| ||  ||| ||||||||| || ||||||||||||||||| ||||    
T  31094768 agaatgatgatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatt 31094846  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 21190469 - 21190538
Alignment:
Q  125 gtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacattta 193  Q
    ||||||||| |||||||| |||||  || |||||||||| ||||||| ||||||||||||||||||||||    
T  21190469 gtctaatgttaaggaagatgagaacaattaagatgcttttttagatgaacatgaaacattgtcacattta 21190538  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 21136783 - 21136855
Alignment:
Q  143 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 215  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||  |||||||| | ||||||||| ||||    
T  21136783 gagaatgatgaaaatgcttttttagatgcacataaaacagtgtcactcttaacatattaattttaaatgcatt 21136855  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 21147277 - 21147401
Alignment:
Q  94 gagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatg-ctttattagatgcacatg-----aaacattgtc 186  Q
    |||||||||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||  |||  ||| || ||||||||||     ||||| ||||    
T  21147277 gagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggagaatgatgactatgttttttttggatgcacatgacataaaacaatgtc 21147376  T
Q  187 acatttaacataatcattttaaata 211  Q
    ||||| |||| ||||||||||||||    
T  21147377 acattaaacagaatcattttaaata 21147401  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 21233462 - 21233530
Alignment:
Q  148 tgatgaagatgctttatta-gatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 215  Q
    ||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| ||||||| |||| |||||    
T  21233462 tgatgaagatgtttttttatgatgcgcatgaaacattttcacatttaacagaatcattataaacacatt 21233530  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 21313062 - 21313114
Alignment:
Q  133 taaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgt 185  Q
    |||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  21313062 taaggaagaggacaatgacgaagatgcttctttagatgcacacgaaacattgt 21313114  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 21184371 - 21184429
Alignment:
Q  94 gagaaattgaggaaaaaattgaggatccaaagtctaatg-taaggaagaggagaatgat 151  Q
    ||||||||||||||||| ||||| ||  ||||||| ||| |||||||||||||||||||    
T  21184371 gagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggagaatgat 21184429  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 21279840 - 21279926
Alignment:
Q  126 tctaatgtaaggaa-gaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaata 211  Q
    |||||||||| ||| || |||||||||||||||||||| | ||||  |||||||||  |||||| | ||| | ||||||||||||||    
T  21279840 tctaatgtaaagaaagatgagaatgatgaagatgctttttaagatatacatgaaactgtgtcacgtataatagaatcattttaaata 21279926  T

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Target: scaffold0016 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 65275 - 65194
Alignment:
Q  141 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 222  Q
    |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  65275 aggagaatgatgaagatgcttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatt 65194  T

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Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 74921 - 74842
Alignment:
Q  108 aaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtc 186  Q
    ||||||||| ||  |||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  74921 aaaattgagaatagaaagtctaatgttaaggaagaggagaataatgaaggtgctttattagatgaacatgaaacattgtc 74842  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 20109 - 20168
Alignment:
Q  137 gaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacat 197  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||||||||| ||||||    
T  20109 gaagaggagaatgatgatgttgcttt-ttagatgcacatgaaagattgtcacatataacat 20168  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 3484 - 3562
Alignment:
Q  144 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 222  Q
    ||||||| || ||| |||| ||||| ||||||||| || || ||||||||||| || ||||||||||||||||| ||||    
T  3484 agaatgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatt 3562  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 24944361 - 24944414
Alignment:
Q  156 atgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaa 209  Q
    ||||||| | |||||||||| ||| |||||||||||||||| ||||||| ||||    
T  24944361 atgctttttcagatgcacataaaatattgtcacatttaacaaaatcattataaa 24944414  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 3495 - 3455
Alignment:
Q  182 ttgtcacatttaacataatcattttaaatacattatatatt 222  Q
    ||||||||||||||| ||||||||| |||||||||| ||||    
T  3495 ttgtcacatttaacagaatcattttgaatacattatgtatt 3455  T

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