View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17449_low_2 (Length: 519)
Name: NF17449_low_2
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17449_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 47 - 501
Target Start/End: Original strand, 26879725 - 26880179
Alignment:
| Q |
47 |
cccttgtaggtgaaatgaaaatttgaggaagtaggtatatgggataaatatcataataaagttgatagccatattgcgatcataaaaaattgactaatct |
146 |
Q |
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| T |
26879725 |
cccttgtaggtgaaatgaaaatttgaggaagtaggtatatgggataaatatcataataaagttgatagccatattgcgatcataaaaaattgactaatct |
26879824 |
T |
|
| Q |
147 |
gactgttagtccgtgctgggaacatctcatgatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattttgtggcaataaaga |
246 |
Q |
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| T |
26879825 |
gactgttagtccgtgctgggaacatctcataatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattctgtggcaataaaga |
26879924 |
T |
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| Q |
247 |
tcaaaacaaatatgacatgtagcaaaagcagaaaaaacgcaaagatctagtaagtacgaagataaaacctgacatttgaatgtgatttaaaatataccag |
346 |
Q |
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| T |
26879925 |
tcaaaacaaatatgacatgtagcaaaagcagaaaaaacgcaaagatctagtaagtacgaagataaaacttgacatttgaatgtgatttaaaatataccag |
26880024 |
T |
|
| Q |
347 |
taaaacaataaataacaaaatttcaaaggcggtttcaaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctactc |
446 |
Q |
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| T |
26880025 |
taaaacaataaataacaaaatttcaaaggcggtttcaaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctgctc |
26880124 |
T |
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| Q |
447 |
ctacacagcggttcattcctttaaataaacccagcgtaaattgtataatatgtac |
501 |
Q |
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| T |
26880125 |
ctacacagcggttcattcctttaaataaacccagcgtaaattgtataatatgtac |
26880179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 150 - 326
Target Start/End: Original strand, 40249366 - 40249539
Alignment:
| Q |
150 |
tgttagtccgtgctgggaacatctcatgatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattttgtggcaataaagatca |
249 |
Q |
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||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | |||||| |
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| T |
40249366 |
tgttagttcgtgcagggaacacctcgtgatgttcaaattttgggccaatttctgctagcttcaattcatcaacaagcaaattctgttgcagt--agatca |
40249463 |
T |
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| Q |
250 |
aaacaaatatgacatgtagcaaaagcagaaaaaacgcaaagatctagtaagtacgaagataaaacctgacatttgaa |
326 |
Q |
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||||||||||||||| ||| |||| |||||||| | |||||| | |||||| ||||||||| ||||| |||||| |
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| T |
40249464 |
aaacaaatatgacat-taggaaaatcagaaaaagtgttgagatcttgcaagtacaaagataaaagctgacgtttgaa |
40249539 |
T |
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