View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17449_low_3 (Length: 440)
Name: NF17449_low_3
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17449_low_3 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 33383389 - 33382966
Alignment:
| Q |
18 |
cttcttccacagacctcttagctaactttgacaacaatttcactcttttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383389 |
cttcttccacagacctcttagctaactttgacaacaatttcactcttttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttc |
33383290 |
T |
|
| Q |
118 |
cagtgcatcccattgaacact-atctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcatt |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383289 |
cagtgcatcccattgaacacttatctccctccaatccaacccattttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcatt |
33383190 |
T |
|
| Q |
217 |
gtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctcca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383189 |
gtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaaccacaccttctaaaactgaattccatccacaatgagtcacaaatgctcca |
33383090 |
T |
|
| Q |
317 |
attgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383089 |
attgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttataattagtccctttccttccattcttttctcaaatccttctggtagccaatctt |
33382990 |
T |
|
| Q |
417 |
ctccatcttctctgctcctcctca |
440 |
Q |
| |
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||||||||||| |||| ||||||| |
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| T |
33382989 |
ctccatcttctttgcttctcctca |
33382966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 65 - 397
Target Start/End: Original strand, 33390713 - 33391045
Alignment:
| Q |
65 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
164 |
Q |
| |
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||||||||||||| | ||||||| ||||||||| | |||||||||| || |||| ||||||||| ||||| |||| | | || |||| ||||| ||| |
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| T |
33390713 |
ttcctcatttcctttgcttcttctccttccataaccttcttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttt |
33390812 |
T |
|
| Q |
165 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagc |
264 |
Q |
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|| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |||| ||| | ||||||||||| |||||||| ||||| |
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| T |
33390813 |
tagctccaacaggtacaccaattttaagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagc |
33390912 |
T |
|
| Q |
265 |
aactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttata |
364 |
Q |
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| |||||| ||| ||| | | |||||||||||||||||||||| ||||||||| |||| |||| ||||||||| ||| || ||||||||||||||| |
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| T |
33390913 |
agctacactttccaaagttaagttccatccacaatgagtcacaattgctccaatagctttatgttgaagaatcaaaagttgaggagaccaacctcttata |
33391012 |
T |
|
| Q |
365 |
attagtccctttccttccattcttttctcaaat |
397 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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| T |
33391013 |
attagtccctttcctttcattcttttctcaaat |
33391045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 33401723 - 33401823
Alignment:
| Q |
205 |
caacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtc |
304 |
Q |
| |
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||||||||||||| |||||| ||||| | || |||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
33401723 |
caacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtc |
33401822 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
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| |
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| T |
33401823 |
a |
33401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 65 - 427
Target Start/End: Original strand, 27688480 - 27688842
Alignment:
| Q |
65 |
ttcctcatttcctctacttcttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttt |
164 |
Q |
| |
|
||||||||||| | | ||||||| ||||||||| |||||||||||| || |||| ||||||||||| |||| |||| || || |||||| |||| |
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| T |
27688480 |
ttcctcatttcatatgcttcttccccttccataaccctcttcacagccttctccactgcatcccattcaacattatccccaaccttcataacccactttt |
27688579 |
T |
|
| Q |
165 |
taactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagc |
264 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| || || || ||||||||||||| |||||||| ||||| |
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| T |
27688580 |
taactccaacaggtacaccagttttaagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactccagc |
27688679 |
T |
|
| Q |
265 |
aactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctcttata |
364 |
Q |
| |
|
|| || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| | ||| || ||||||||||||||| |
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| T |
27688680 |
taccactccttctaaaaccgaattccatccgcaatgcgtcacaaatgccccgattgcttcatgttcaagaatcatcacttgtggagaccaacctcttata |
27688779 |
T |
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| Q |
365 |
attagtccctttccttccattcttttctcaaatccttctggtagccaatcttctccatcttct |
427 |
Q |
| |
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|||||||| ||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
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| T |
27688780 |
attagtccttttccttccgttctttcctcgaatccttcaggtagccattcatctccatcttct |
27688842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 160 - 397
Target Start/End: Complemental strand, 18989693 - 18989456
Alignment:
| Q |
160 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtacc |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
|
| Q |
260 |
ccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaattgcttcgtgttcaagaatcaacgtttgcggcgaccaacctc |
359 |
Q |
| |
|
|||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |||| |||| || |||||| ||| | | |||||||| |
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|
| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaatagctttatgttgaaaaatcaaaagttgaagaggccaacctc |
18989494 |
T |
|
| Q |
360 |
ttataattagtccctttccttccattcttttctcaaat |
397 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| |
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|
| T |
18989493 |
ttataattagtccttttcctttcattattttctcaaat |
18989456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 19001937 - 19001890
Alignment:
| Q |
350 |
gaccaacctcttataattagtccctttccttccattcttttctcaaat |
397 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
19001937 |
gaccaacctcttataattagtccgtttcctttcatccttttctcaaat |
19001890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Original strand, 11646 - 11686
Alignment:
| Q |
280 |
aactgaattccatccacaatgagtcacaaatgctccaattg |
320 |
Q |
| |
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|||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattg |
11686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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