View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17449_low_4 (Length: 339)

Name: NF17449_low_4
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17449_low_4
NF17449_low_4
[»] chr1 (31 HSPs)
chr1 (10-251)||(49591136-49591377)
chr1 (18-115)||(47605442-47605539)
chr1 (94-150)||(33884094-33884150)
chr1 (94-150)||(33960102-33960158)
chr1 (94-150)||(38331979-38332035)
chr1 (22-113)||(29730757-29730848)
chr1 (96-150)||(5981176-5981230)
chr1 (94-150)||(26277183-26277239)
chr1 (94-150)||(26525009-26525065)
chr1 (96-150)||(4068805-4068859)
chr1 (96-150)||(4243601-4243655)
chr1 (96-150)||(5980074-5980128)
chr1 (96-150)||(6327669-6327723)
chr1 (96-150)||(17995073-17995127)
chr1 (96-150)||(23221051-23221105)
chr1 (96-150)||(23984761-23984815)
chr1 (96-150)||(24245147-24245201)
chr1 (96-150)||(24885507-24885561)
chr1 (96-150)||(25058694-25058748)
chr1 (96-150)||(25518820-25518874)
chr1 (96-150)||(27983709-27983763)
chr1 (96-150)||(31308007-31308061)
chr1 (96-150)||(31980057-31980111)
chr1 (96-150)||(44661976-44662030)
chr1 (96-150)||(45538159-45538213)
chr1 (96-150)||(47383854-47383908)
chr1 (96-150)||(48373510-48373564)
chr1 (96-150)||(50774223-50774277)
chr1 (96-150)||(51403129-51403183)
chr1 (97-150)||(4156188-4156241)
chr1 (94-150)||(46616555-46616611)
[»] chr5 (15 HSPs)
chr5 (10-150)||(28756084-28756224)
chr5 (96-150)||(4149700-4149754)
chr5 (96-150)||(5184978-5185032)
chr5 (94-148)||(9527129-9527183)
chr5 (96-150)||(15398604-15398658)
chr5 (96-150)||(18479790-18479844)
chr5 (96-150)||(23195359-23195413)
chr5 (96-150)||(24253388-24253442)
chr5 (96-150)||(31294111-31294165)
chr5 (96-150)||(38015625-38015679)
chr5 (96-150)||(40632505-40632559)
chr5 (96-150)||(40886149-40886203)
chr5 (96-150)||(43326501-43326555)
chr5 (98-150)||(25831527-25831579)
chr5 (96-148)||(39932587-39932639)
[»] chr8 (21 HSPs)
chr8 (96-150)||(42701412-42701466)
chr8 (96-150)||(25185905-25185959)
chr8 (94-150)||(2379146-2379202)
chr8 (94-150)||(17718842-17718898)
chr8 (96-150)||(2275919-2275973)
chr8 (96-150)||(2714555-2714609)
chr8 (96-150)||(5946053-5946107)
chr8 (96-150)||(6365992-6366046)
chr8 (96-150)||(9013690-9013744)
chr8 (96-150)||(9509511-9509565)
chr8 (96-150)||(31831077-31831131)
chr8 (96-150)||(32114255-32114309)
chr8 (96-150)||(32984199-32984253)
chr8 (96-150)||(37301447-37301501)
chr8 (96-150)||(37419946-37420000)
chr8 (96-150)||(41653901-41653955)
chr8 (96-150)||(41862226-41862280)
chr8 (96-150)||(43328713-43328767)
chr8 (96-145)||(4975518-4975567)
chr8 (108-173)||(32373849-32373914)
chr8 (96-148)||(24080023-24080075)
[»] chr3 (23 HSPs)
chr3 (17-150)||(42291848-42291981)
chr3 (96-150)||(49330043-49330097)
chr3 (94-150)||(41293438-41293494)
chr3 (94-150)||(51452870-51452926)
chr3 (94-150)||(52628960-52629016)
chr3 (96-150)||(2666006-2666060)
chr3 (96-150)||(7755428-7755482)
chr3 (96-150)||(22399103-22399157)
chr3 (96-150)||(24100289-24100343)
chr3 (96-150)||(29625949-29626003)
chr3 (96-150)||(31286904-31286958)
chr3 (96-150)||(32234519-32234573)
chr3 (96-150)||(36368945-36368999)
chr3 (96-150)||(39053400-39053454)
chr3 (96-150)||(40131081-40131135)
chr3 (96-150)||(41464358-41464412)
chr3 (94-148)||(43021722-43021776)
chr3 (96-150)||(44806690-44806744)
chr3 (96-150)||(47257799-47257853)
chr3 (94-148)||(47894940-47894994)
chr3 (103-148)||(37741443-37741488)
chr3 (98-150)||(5560156-5560208)
chr3 (94-150)||(37313405-37313461)
[»] chr7 (20 HSPs)
chr7 (94-150)||(37846136-37846192)
chr7 (94-150)||(47067097-47067153)
chr7 (96-150)||(17855435-17855489)
chr7 (97-150)||(30077048-30077101)
chr7 (96-150)||(10028495-10028549)
chr7 (96-150)||(20165936-20165990)
chr7 (96-150)||(22979769-22979823)
chr7 (96-150)||(31625711-31625765)
chr7 (96-150)||(33332796-33332850)
chr7 (96-150)||(33720158-33720212)
chr7 (96-150)||(33839837-33839891)
chr7 (96-150)||(43489225-43489279)
chr7 (96-150)||(45063477-45063531)
chr7 (96-150)||(45482665-45482719)
chr7 (96-150)||(49171484-49171538)
chr7 (96-145)||(498299-498348)
chr7 (96-148)||(2341784-2341836)
chr7 (94-150)||(33695941-33695997)
chr7 (96-148)||(43499494-43499546)
chr7 (94-150)||(48609797-48609853)
[»] scaffold0100 (1 HSPs)
scaffold0100 (96-150)||(32567-32621)
[»] chr6 (15 HSPs)
chr6 (96-150)||(19415655-19415709)
chr6 (94-150)||(599898-599954)
chr6 (94-150)||(28947093-28947149)
chr6 (96-150)||(2892194-2892248)
chr6 (96-150)||(5882512-5882566)
chr6 (96-150)||(7393708-7393762)
chr6 (96-150)||(16703372-16703426)
chr6 (96-150)||(18101617-18101671)
chr6 (96-150)||(19281177-19281231)
chr6 (96-150)||(22551183-22551237)
chr6 (96-150)||(24168097-24168151)
chr6 (96-150)||(30743570-30743624)
chr6 (94-150)||(929665-929721)
chr6 (98-150)||(1970717-1970769)
chr6 (96-148)||(34527984-34528036)
[»] chr4 (33 HSPs)
chr4 (96-150)||(237483-237537)
chr4 (96-150)||(3692332-3692386)
chr4 (96-150)||(27373082-27373136)
chr4 (96-150)||(39077551-39077605)
chr4 (96-150)||(41949388-41949442)
chr4 (96-150)||(42085213-42085267)
chr4 (96-150)||(42557588-42557642)
chr4 (94-150)||(146549-146605)
chr4 (94-150)||(3170632-3170688)
chr4 (96-148)||(42033183-42033235)
chr4 (94-150)||(42222297-42222353)
chr4 (94-150)||(43471815-43471871)
chr4 (94-150)||(47344662-47344718)
chr4 (95-150)||(49057978-49058033)
chr4 (96-150)||(6019934-6019988)
chr4 (96-150)||(6285313-6285367)
chr4 (96-150)||(18462135-18462189)
chr4 (96-150)||(21366731-21366785)
chr4 (96-150)||(22618634-22618688)
chr4 (96-150)||(23437598-23437652)
chr4 (96-150)||(29777379-29777433)
chr4 (96-150)||(47662224-47662278)
chr4 (96-150)||(48259632-48259686)
chr4 (96-150)||(48313563-48313617)
chr4 (96-150)||(49881185-49881239)
chr4 (96-150)||(51363013-51363067)
chr4 (96-150)||(53854551-53854605)
chr4 (94-150)||(573809-573865)
chr4 (96-148)||(9798473-9798525)
chr4 (94-150)||(29478366-29478422)
chr4 (96-148)||(33897617-33897669)
chr4 (94-150)||(41702579-41702635)
chr4 (94-150)||(54805738-54805794)
[»] chr2 (19 HSPs)
chr2 (96-150)||(7892810-7892864)
chr2 (96-150)||(32948451-32948505)
chr2 (94-150)||(4034597-4034653)
chr2 (94-150)||(10424600-10424656)
chr2 (96-150)||(746471-746525)
chr2 (96-150)||(2325011-2325065)
chr2 (98-148)||(4609633-4609683)
chr2 (96-150)||(6594580-6594634)
chr2 (96-150)||(12814619-12814673)
chr2 (96-150)||(13815340-13815394)
chr2 (96-150)||(23901784-23901838)
chr2 (96-150)||(26710350-26710404)
chr2 (96-150)||(27331303-27331357)
chr2 (96-150)||(38997106-38997160)
chr2 (96-148)||(1092073-1092125)
chr2 (96-148)||(10244704-10244756)
chr2 (96-148)||(14697659-14697711)
chr2 (96-148)||(34518374-34518426)
chr2 (96-148)||(37620992-37621044)
[»] scaffold0949 (1 HSPs)
scaffold0949 (96-150)||(1875-1929)
[»] scaffold0092 (1 HSPs)
scaffold0092 (96-150)||(39678-39732)
[»] scaffold0035 (1 HSPs)
scaffold0035 (96-150)||(75366-75420)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 49591377 - 49591136
Alignment:
Q  10 taatctacccaaccaataatcattaatcacataagtacattttcaagtggcacctacaaactaccattaattccactaacaaaggttcatttttattagt 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  49591377 taatttacccaaccaataatcattaatcacataagtacattttcaaatggcacctacaaactaccattaattccattaacaaaggttcaattttattagt 49591278  T
Q  110 tggtgggttaatcacccaccattatttaaaggtaatctagacgaagaagaaaactaattttatttgctaacaaaagagatacctaaactcttataagtga 209  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49591277 tgatgggttaatcacccaccattgtttaaaggtaatctagacgaagaagaaaactaattttatttgctaacaaaagagatacctaaactcttataagtga 49591178  T
Q  210 tcaattatatgcgtttttcgaaaacgatcaaaatatcaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49591177 tcaattatatgcgtttttcgaaaacgatcaaaatatcaaaag 49591136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 47605539 - 47605442
Alignment:
Q  18 ccaaccaataatcattaatcacataagtacattttcaagtggcacctacaaactaccattaattccactaacaaaggttcatttttattagttggtgg 115  Q
    |||||||||||  ||||  ||||||| || |||||||||||||| ||||||||||||||| || ||| ||||||||||||||||| |||  |||||||    
T  47605539 ccaaccaataaatattagccacataaatatattttcaagtggcatctacaaactaccattgatcccattaacaaaggttcattttcattgattggtgg 47605442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 33884150 - 33884094
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  33884150 gttcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 33884094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 33960102 - 33960158
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  33960102 gttcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 33960158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 38331979 - 38332035
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  38331979 gttcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatctaga 38332035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 29730757 - 29730848
Alignment:
Q  22 ccaataatcattaatcacataagtacattttcaagtggcacctacaaactaccattaattccactaacaaaggttcatttttattagttggt 113  Q
    ||||||| |||||  ||| |||||||||||||||| |||||| ||||| ||||||| |   |||||||||||||| ||||| ||| ||||||    
T  29730757 ccaataaacattagccacgtaagtacattttcaagaggcacccacaaagtaccattgacctcactaacaaaggtttattttcattggttggt 29730848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 5981230 - 5981176
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5981230 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5981176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 26277239 - 26277183
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  26277239 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 26277183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 26525009 - 26525065
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  26525009 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 26525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 4068805 - 4068859
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  4068805 tcattttcattggttggtgggtaaattacccaccatttttcaaaggtaatctaga 4068859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 4243601 - 4243655
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| ||||||||||||| ||||||||| ||||    
T  4243601 tcattttcattggttggtgggtaaattacccaccattattcaaaggtaatttaga 4243655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 5980128 - 5980074
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5980128 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5980074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 6327669 - 6327723
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  6327669 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 6327723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 17995073 - 17995127
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  17995073 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 17995127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 23221051 - 23221105
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  23221051 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 23221105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 23984815 - 23984761
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||| ||||| ||| |||||||||| || ||||||||||||||    
T  23984815 tcatttttattggttgatgggtaaattacccaccattcttcaaaggtaatctaga 23984761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 24245147 - 24245201
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  24245147 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 24245201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24885561 - 24885507
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  24885561 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 24885507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 25058748 - 25058694
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  25058748 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 25058694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 25518874 - 25518820
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  25518874 tcattttcattggttggtgggtaaattacccaccatttttcaaaggtaatctaga 25518820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 27983709 - 27983763
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  27983709 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 27983763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 31308061 - 31308007
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  31308061 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 31308007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31980057 - 31980111
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  31980057 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 31980111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 44662030 - 44661976
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  44662030 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 44661976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 45538213 - 45538159
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  45538213 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 45538159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 47383854 - 47383908
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||| ||||    
T  47383854 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatataga 47383908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 48373564 - 48373510
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  48373564 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 48373510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 50774277 - 50774223
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||||||| |||||||||| || ||||||||| ||||    
T  50774277 tcattttcattggttggtgggttaattacccaccattcttcaaaggtaatttaga 50774223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 51403129 - 51403183
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  51403129 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 51403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 4156188 - 4156241
Alignment:
Q  97 catttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    |||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  4156188 cattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 4156241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 46616611 - 46616555
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| |||  ||||||||| ||| |||||||||| || ||||||||||||||    
T  46616611 gttcattttcattgattggtgggtaaattacccaccattcttcaaaggtaatctaga 46616555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 28756224 - 28756084
Alignment:
Q  10 taatctacccaaccaataatcattaatcacataagtacattttcaagtggcacctacaaactaccattaattccactaacaaaggttcatttttattagt 109  Q
    |||| ||||||| |||||| |||| | || ||||||||||||||||||| |||| |||||| |||| | ||   | ||||||||||||||||| |||  |    
T  28756224 taatttacccaatcaataaacattgaccatataagtacattttcaagtgccaccaacaaaccaccaatgatcatattaacaaaggttcattttcattgct 28756125  T
Q  110 tggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    |||||||| ||| | ||||| || ||||||||| |||||||    
T  28756124 tggtgggtaaattatccacctttctttaaaggtgatctaga 28756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 4149754 - 4149700
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||| ||||    
T  4149754 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatataga 4149700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 5185032 - 5184978
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5185032 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5184978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 9527129 - 9527183
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  9527129 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 9527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 15398604 - 15398658
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  15398604 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 15398658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 18479790 - 18479844
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  18479790 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 18479844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 23195359 - 23195413
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||| ||||    
T  23195359 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatttaga 23195413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24253442 - 24253388
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  24253442 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 24253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31294111 - 31294165
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| | |||||||| |||||||||||||||||    
T  31294111 tcattttcattggttggtgggtaaattatccaccattctttaaaggtaatctaga 31294165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 38015625 - 38015679
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||| ||||    
T  38015625 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatttaga 38015679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 40632559 - 40632505
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  40632559 tcattttcattggttggtgggtaaattacccaccatttttcaaaggtaatctaga 40632505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 40886149 - 40886203
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  40886149 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 40886203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 43326501 - 43326555
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  43326501 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 43326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 25831579 - 25831527
Alignment:
Q  98 atttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  25831579 attttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 25831527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 39932639 - 39932587
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  39932639 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 39932587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 42701412 - 42701466
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||    
T  42701412 tcatttttattggttggtgggtaaattacccaccattattcaaaggtaatctaga 42701466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 25185959 - 25185905
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  25185959 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 25185905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 2379202 - 2379146
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| |||||||||||||| ||| |||||||||| || ||||||||| ||||    
T  2379202 gttcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatttaga 2379146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 17718842 - 17718898
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  17718842 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 17718898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2275973 - 2275919
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  2275973 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 2275919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2714609 - 2714555
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  2714609 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 2714555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 5946107 - 5946053
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5946107 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5946053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 6366046 - 6365992
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  6366046 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 6365992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 9013744 - 9013690
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| ||| |||||| || ||||||||||||||    
T  9013744 tcatttttattggttggtgggtaaattacctaccattcttcaaaggtaatctaga 9013690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 9509511 - 9509565
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| || ||||||| |||||||||||| ||||    
T  9509511 tcatttttattggttggtgggtaaattacacaccattctttaaaggtaatttaga 9509565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31831077 - 31831131
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  31831077 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 31831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32114309 - 32114255
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  32114309 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 32114255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 32984199 - 32984253
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  32984199 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 32984253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 37301447 - 37301501
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  37301447 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 37301501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 37420000 - 37419946
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  37420000 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 37419946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 41653955 - 41653901
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  41653955 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 41653901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 41862280 - 41862226
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  41862280 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 41862226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 43328767 - 43328713
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  43328767 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 43328713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 4975518 - 4975567
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaat 145  Q
    ||||||||||| |||||||||| ||| |||||||||| || |||||||||    
T  4975518 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaat 4975567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 32373849 - 32373914
Alignment:
Q  108 gttggtgggttaatcacccaccattatttaaaggtaatctagacgaagaagaaaactaattttatt 173  Q
    |||||||||| ||| |||||||||| |||||||||||| |||| ||| || ||| |||| ||||||    
T  32373849 gttggtgggtaaattacccaccattttttaaaggtaatttagaagaaaaaaaaacctaaatttatt 32373914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 24080023 - 24080075
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  24080023 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 24080075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 42291981 - 42291848
Alignment:
Q  17 cccaaccaataatcattaatcacataagtacattttcaagtggcacctacaaactaccattaattccactaacaaag-gttcatttttattagttggtgg 115  Q
    |||||||||||  |||||  ||||||||||||||||||||||| | |||  ||||| | || |  |||| ||||||  ||||||||| ||| ||||||||    
T  42291981 cccaaccaatacacattagccacataagtacattttcaagtggtatctatgaactatc-ttgaccccaccaacaaattgttcattttcattggttggtgg 42291883  T
Q  116 gttaatcacccaccattatttaaaggtaatctaga 150  Q
    || ||| |||||||||| || ||||||||||||||    
T  42291882 gtaaattacccaccattcttcaaaggtaatctaga 42291848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 49330097 - 49330043
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  49330097 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 49330043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 41293438 - 41293494
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  41293438 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 41293494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 51452870 - 51452926
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  51452870 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 51452926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 52629016 - 52628960
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  52629016 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 52628960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2666060 - 2666006
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  2666060 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 2666006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 7755428 - 7755482
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  7755428 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 7755482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 22399157 - 22399103
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  22399157 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 22399103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24100343 - 24100289
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  24100343 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 24100289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 29625949 - 29626003
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  29625949 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 29626003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 31286904 - 31286958
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||| ||||    
T  31286904 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatttaga 31286958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 32234519 - 32234573
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  32234519 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 32234573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 36368999 - 36368945
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    |||||||||||||||||||||| ||| | | |||||| || ||||||||||||||    
T  36368999 tcatttttattagttggtgggtaaattatcgaccattcttcaaaggtaatctaga 36368945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 39053454 - 39053400
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  39053454 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 39053400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 40131081 - 40131135
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  40131081 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 40131135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 41464412 - 41464358
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  41464412 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 41464358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 43021776 - 43021722
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  43021776 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 43021722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 44806744 - 44806690
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  44806744 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 44806690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 47257853 - 47257799
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  47257853 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 47257799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 47894940 - 47894994
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||||| |||||||||| ||| ||| | |||||||| |||||||||||||||    
T  47894940 gttcattttcattagttggtaggtaaattatccaccattctttaaaggtaatcta 47894994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 37741488 - 37741443
Alignment:
Q  103 tattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    |||| |||||||||| ||| |||||||||| |||||||||||||||    
T  37741488 tattggttggtgggtaaattacccaccattctttaaaggtaatcta 37741443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 5560156 - 5560208
Alignment:
Q  98 atttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5560156 attttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5560208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 37313461 - 37313405
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| |||  ||||||||| ||| |||||||||| || ||||||||||||||    
T  37313461 gttcattttcattgattggtgggtaaattacccaccattcttcaaaggtaatctaga 37313405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 37846136 - 37846192
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  37846136 gttcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 37846192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 47067097 - 47067153
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  47067097 gttcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 47067153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 17855489 - 17855435
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  17855489 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 17855435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 30077048 - 30077101
Alignment:
Q  97 catttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    |||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  30077048 cattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 30077101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 10028549 - 10028495
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  10028549 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 10028495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 20165936 - 20165990
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  20165936 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 20165990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 22979769 - 22979823
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  22979769 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 22979823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 31625765 - 31625711
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| ||  |||||||||||||    
T  31625765 tcattttcattagttggtgggtaaattacccaccattcttcgaaggtaatctaga 31625711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 33332850 - 33332796
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  33332850 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 33332796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 33720158 - 33720212
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||| ||||||||||    
T  33720158 tcatttttattggttggtgggtaaattacccaccattcttcaaaagtaatctaga 33720212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 33839837 - 33839891
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  33839837 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 33839891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 43489279 - 43489225
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| ||||||||||||| ||||||||| ||||    
T  43489279 tcattttcattggttggtgggtaaattacccaccattattcaaaggtaatttaga 43489225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 45063477 - 45063531
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  45063477 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 45063531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 45482719 - 45482665
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  45482719 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 45482665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 49171484 - 49171538
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  49171484 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 49171538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 498299 - 498348
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaat 145  Q
    ||||||| |||||||||||||| ||| |||||||||| || |||||||||    
T  498299 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaat 498348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 2341784 - 2341836
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  2341784 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 2341836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 33695941 - 33695997
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| | |||||||| || ||||||||||||||    
T  33695941 gttcattttcattggttggtgggtaaattatccaccattcttcaaaggtaatctaga 33695997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 43499546 - 43499494
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| || ||||||| |||||||||||||||    
T  43499546 tcattttcattggttggtgggtaaattactcaccattctttaaaggtaatcta 43499494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 48609797 - 48609853
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||| | ||| |||||||||| || ||||||||||||||    
T  48609797 gttcattttcattggttggtggataaattacccaccattcttcaaaggtaatctaga 48609853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32621 - 32567
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||||||| |||||||||| || ||||||||||||||    
T  32621 tcattttcattggttggtgggttaattacccaccattcttcaaaggtaatctaga 32567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 19415655 - 19415709
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  19415655 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatctaga 19415709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 599954 - 599898
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  599954 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 28947149 - 28947093
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  28947149 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 28947093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2892248 - 2892194
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  2892248 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 2892194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 5882566 - 5882512
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  5882566 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 5882512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 7393708 - 7393762
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| || ||||||| |||||||||||||||||    
T  7393708 tcattttcattggttggtgggtaaattactcaccattctttaaaggtaatctaga 7393762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 16703426 - 16703372
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  16703426 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 16703372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 18101617 - 18101671
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  18101617 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 18101671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 19281177 - 19281231
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||  ||| |||||||||| || ||||||||||||||    
T  19281177 tcatttttattggttggtgggcaaattacccaccattcttcaaaggtaatctaga 19281231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 22551183 - 22551237
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  22551183 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 22551237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24168151 - 24168097
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| | |||||||| || ||||||||||||||    
T  24168151 tcatttttattggttggtgggtaaattatccaccattcttcaaaggtaatctaga 24168097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 30743570 - 30743624
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  30743570 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 30743624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 929721 - 929665
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| | |||||||| || ||||||||||||||    
T  929721 gttcattttcattggttggtgggtaaattatccaccattcttcaaaggtaatctaga 929665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 1970769 - 1970717
Alignment:
Q  98 atttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  1970769 attttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 1970717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 34527984 - 34528036
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  34527984 tcattttcattggttggtgggtaaattacccaccatttttcaaaggtaatcta 34528036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 237537 - 237483
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  237537 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 237483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 3692332 - 3692386
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| ||||||||||||| ||||||||||||||    
T  3692332 tcattttcattggttggtgggtaaattacccaccattattcaaaggtaatctaga 3692386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 27373136 - 27373082
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  27373136 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 27373082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 39077605 - 39077551
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  39077605 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatctaga 39077551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 41949442 - 41949388
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  41949442 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 41949388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 42085267 - 42085213
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  42085267 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 42085213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 42557642 - 42557588
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  42557642 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 42557588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 146549 - 146605
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  146549 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 3170688 - 3170632
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||||| |||||||||| ||| || ||||||| || ||||||||||||||    
T  3170688 gttcatttttattggttggtgggtaaattacacaccattcttcaaaggtaatctaga 3170632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 42033235 - 42033183
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||||||    
T  42033235 tcattttaattagttggtgggtaaattacccaccattcttcaaaggtaatcta 42033183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 42222353 - 42222297
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  42222353 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 42222297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 43471815 - 43471871
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  43471815 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 43471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 47344718 - 47344662
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  47344718 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 47344662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 49057978 - 49058033
Alignment:
Q  95 ttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    |||||||| ||| |||||||||| ||| || ||||||| |||||||||||||||||    
T  49057978 ttcattttcattggttggtgggtaaattactcaccattctttaaaggtaatctaga 49058033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 6019988 - 6019934
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  6019988 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 6019934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 6285367 - 6285313
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || ||||||||| ||||    
T  6285367 tcatttttattggttggtgggtaaattacccaccattcttcaaaggtaatataga 6285313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 18462135 - 18462189
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  18462135 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 18462189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 21366731 - 21366785
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  21366731 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 21366785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 22618634 - 22618688
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  22618634 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 22618688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 23437652 - 23437598
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  23437652 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 23437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 29777379 - 29777433
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  29777379 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 29777433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 47662224 - 47662278
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| | ||||||||||| ||||||||||||||    
T  47662224 tcattttcattggttggtgggtaaattatccaccattattcaaaggtaatctaga 47662278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 48259632 - 48259686
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||||| |||||||||| ||| |||||||||| || || |||||||||||    
T  48259632 tcatttttattggttggtgggtaaattacccaccattcttcaagggtaatctaga 48259686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 48313617 - 48313563
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  48313617 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 48313563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 49881185 - 49881239
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  49881185 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 49881239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 51363067 - 51363013
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  51363067 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 51363013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 53854551 - 53854605
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  53854551 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 53854605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 573865 - 573809
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| | ||| |||||| ||| ||| |||||||||| |||||||||||||||||    
T  573865 gttcattatgattggttggtaggtaaattacccaccattttttaaaggtaatctaga 573809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 9798525 - 9798473
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  9798525 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 9798473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 29478422 - 29478366
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| ||| |||||| ||| |||||||||| || ||||||||||||||    
T  29478422 gttcattttcattggttagtgggtaaattacccaccattcttcaaaggtaatctaga 29478366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 33897617 - 33897669
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  33897617 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 33897669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 41702579 - 41702635
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| | | |||||||||| || ||||||||||||||    
T  41702579 gttcattttcattggttggtgggtaagttacccaccattcttcaaaggtaatctaga 41702635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 54805738 - 54805794
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| |||  ||||||||| ||| |||||||||| || ||||||||||||||    
T  54805738 gttcattttcattgattggtgggtaaattacccaccattcttcaaaggtaatctaga 54805794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 7892810 - 7892864
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  7892810 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatctaga 7892864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32948505 - 32948451
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  32948505 tcattttcattggttggtgggtaaattacccaccattctttaaaggtaatctaga 32948451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 4034653 - 4034597
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  4034653 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 4034597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 10424656 - 10424600
Alignment:
Q  94 gttcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  10424656 gttcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 10424600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 746525 - 746471
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  746525 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 746471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 2325011 - 2325065
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  2325011 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 2325065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 4609683 - 4609633
Alignment:
Q  98 atttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||| |||||||||||||| ||| |||||||||| || ||||||||||||    
T  4609683 attttcattagttggtgggtaaattacccaccattcttcaaaggtaatcta 4609633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 6594580 - 6594634
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  6594580 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 6594634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 12814673 - 12814619
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  12814673 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 12814619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 13815340 - 13815394
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  13815340 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 13815394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 23901838 - 23901784
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  23901838 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 23901784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 26710404 - 26710350
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  26710404 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 26710350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 27331357 - 27331303
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||||||||| ||||    
T  27331357 tcattttcattagttggtgggtaaattacccaccattcttcaaaggtaatttaga 27331303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 38997160 - 38997106
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  38997160 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 38997106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 1092073 - 1092125
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| |||||||||||||| ||| | |||||||| || ||||||||||||    
T  1092073 tcattttcattagttggtgggtaaattatccaccattcttcaaaggtaatcta 1092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 10244704 - 10244756
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  10244704 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 10244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 14697659 - 14697711
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| |||||||||||||| ||| |||||||||| || ||| ||||||||    
T  14697659 tcattttcattagttggtgggtaaattacccaccattcttcaaaagtaatcta 14697711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 34518426 - 34518374
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  34518426 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 34518374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 37620992 - 37621044
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatcta 148  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||    
T  37620992 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatcta 37621044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0949 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0949
Description:

Target: scaffold0949; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 1929 - 1875
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  1929 tcattttcattggttggtgggtaaattacccaccatttttcaaaggtaatctaga 1875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 39678 - 39732
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  39678 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 39732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 75366 - 75420
Alignment:
Q  96 tcatttttattagttggtgggttaatcacccaccattatttaaaggtaatctaga 150  Q
    ||||||| ||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  75366 tcattttcattggttggtgggtaaattacccaccattcttcaaaggtaatctaga 75420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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