View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17449_low_6 (Length: 250)
Name: NF17449_low_6
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17449_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 6475767 - 6475548
Alignment:
| Q |
16 |
cataggatatcaaaatccatcatttgatccttgaggtggtttacagttagtcaagaacctggaagattatgcaagagctcatgactgtcagtgttgtata |
115 |
Q |
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| T |
6475767 |
catagcatatcaaaatccatcatttgatccttgaggtggtttacagttagtcaagaacctggaagattatgcaagagctcatgactgtcagtgttgtata |
6475668 |
T |
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| Q |
116 |
accgtaagaaaagtgaaattttgttgttacaatcaatcatctaaaagttctgtgaataactttgtgatatactataaaaaaccccattatgttactactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6475667 |
accgtaagaaaagtgaaattttgttgttacaatcaatcatctaaaagttctgtgaataactttgtgatatactata-aaaaccccattatgttactactt |
6475569 |
T |
|
| Q |
216 |
accaatgactccggggttgat |
236 |
Q |
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||||||||||||||||||||| |
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| T |
6475568 |
accaatgactccggggttgat |
6475548 |
T |
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