View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17449_low_8 (Length: 237)
Name: NF17449_low_8
Description: NF17449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17449_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49591663 - 49591883
Alignment:
| Q |
1 |
agtaaactgaatatgaaattaaagagagtacatcatatattttatatttcatgcgtgacaaagaagatctaaaatcatctgtacttcttttctttcacag |
100 |
Q |
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| T |
49591663 |
agtaaactgaatatgaaattaaagagagtacatcataaattttatatttcatgcgtgacaaagaagatctaaaatcatctgtacttcttttctttcacag |
49591762 |
T |
|
| Q |
101 |
gtccccttggaatcctattgaggactgtagaatccaatttgttgaacaatctcttcacgtcttggtttcctttacttgctagataatccacctcatgttc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49591763 |
gtccccttggaatcctattgagaactgtagaatccaatttgttgaacaatctcttcacgtcttggtttcctttacttgctagataatccacctcatgttc |
49591862 |
T |
|
| Q |
201 |
atacctctcatacataattgg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
49591863 |
atacctctcatacataattgg |
49591883 |
T |
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