View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1744_high_1 (Length: 667)
Name: NF1744_high_1
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1744_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 15 - 650
Target Start/End: Original strand, 32656479 - 32657116
Alignment:
| Q |
15 |
atgaacaagatatgattgggaaaaagtagcagcgagtatcttcaaagttttccttttatccggtgttggtcactctagtggaaatcgtttctcatggcca |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
32656479 |
atgaacaagatatgattcggaaaaagtagcagcgagtatcttcacagttttcctttaatccggcggtggtcactctagtggaaatcatttctcatggcca |
32656578 |
T |
|
| Q |
115 |
ctgagataaaaacaagtgattagtgacgagtaaaaatgcagcaaacgacttgatttgggcaaggaaaaactgatggtagttggcatagggaaggaatcca |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32656579 |
ctgagataaaaaccagtgattagtgacgagtaaaaatgcagcgaatgacttgatttggacaaggaaaaactgatggtagttggcatagggaaggaatcca |
32656678 |
T |
|
| Q |
215 |
tgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagatagggaaaggaaatctccac--c |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
32656679 |
tgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagatagggaaaggatatctccaccac |
32656778 |
T |
|
| Q |
313 |
agtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttcaacatagttgatctctagtagaagaatgttcatgaaaagcaatn |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32656779 |
agtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttcaacatagttgatctctagtagaagaatgttcatgaaaagcaata |
32656878 |
T |
|
| Q |
413 |
nnnnnnnnnnnctattccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagtgctcc |
512 |
Q |
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| T |
32656879 |
aaaaataaaaactattccaaagtcaaagacctgccacaaataaactatttaattttaacttacaaatgtctaaataaaaccatacacttcaaagcgctcc |
32656978 |
T |
|
| Q |
513 |
gactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagttttacagcataaacagaatcacgaaagacaattaattgcagcttctc |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32656979 |
gactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagttttacagcataaacagaatcacgtaagacaattaattgcagcttctc |
32657078 |
T |
|
| Q |
613 |
caatttcttcctcaaatggcggcttatcagactgtttt |
650 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32657079 |
caatttcttcctcaaatggcggcttatcagactgtttt |
32657116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 273 - 578
Target Start/End: Original strand, 32630786 - 32631098
Alignment:
| Q |
273 |
tggaggaaatcccaaaagatagggaaaggaaatctccac--cagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggcttcaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32630786 |
tggaggaaatcccaaaagatagggaaaggaaacctccacagcagtttgcaaagttgagccccatgataacaagctaatatttgctctctgaaggattcaa |
32630885 |
T |
|
| Q |
371 |
catagttgatctctagtagaagaatgttcatg------aaaagcaatnnnnnnnnnnnnctattccaaagtcaaagacctgccacaaataaactatttaa |
464 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
32630886 |
catagttgatctctagtagaagaatgttaatgaaaagaaaaagaaaaagaaaaaaaaaactattccaaagtcaaagacccgccacaaataaactttttaa |
32630985 |
T |
|
| Q |
465 |
atttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaag |
564 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||| |||| |||| |||||||||||||| ||||||||| |||| || |||||||||||||||| |
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| T |
32630986 |
atttaacttacaaatgtctaactaaaaccgtaaacttgaaagcgctctgactaaacggctagttttacagcac-aatgctatccaaaagtgaaaacaaag |
32631084 |
T |
|
| Q |
565 |
ttttacagcataaa |
578 |
Q |
| |
|
|||||||||||||| |
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| T |
32631085 |
ttttacagcataaa |
32631098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 424 - 578
Target Start/End: Original strand, 32581716 - 32581870
Alignment:
| Q |
424 |
ctattccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaacggc |
523 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||| |||| |||| ||||||||||| |
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| T |
32581716 |
ctattccaaagtcaaagacctggcacaaataaacttcttaaatttaacatacaaatatctaactaaaaccataaacttgaaagcgctctgactaaacggc |
32581815 |
T |
|
| Q |
524 |
tagggttacagcacaaatgtagtcgaaaagtgaaaacaaagttttacagcataaa |
578 |
Q |
| |
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||| |||||||||||||| ||| |||||||||| |||||||||||||||||| |
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| T |
32581816 |
tagttttacagcacaaatgcggtccaaaagtgaaattaaagttttacagcataaa |
32581870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 193 - 348
Target Start/End: Original strand, 32581524 - 32581665
Alignment:
| Q |
193 |
gttggcatagggaaggaatccatgttggatgttggaggtggaaggtgagaggcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagat |
292 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
32581524 |
gttggtatagggaaggaatccatgtt---tgt----ggtggaaggtgataggcagtggcagtgaagagtggtgaagga---------aatcccaaaagat |
32581607 |
T |
|
| Q |
293 |
agggaaaggaaatctccac--cagtttgcaaagttgagccccatgataacaagctaat |
348 |
Q |
| |
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|||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
32581608 |
agggaaaggaaacctccaccacaatttgcaaagttgagccccatgataacaagctaat |
32581665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 32630681 - 32630753
Alignment:
| Q |
118 |
agataaaaacaagtgattagtgacgagtaaaaatgcagcaaacgacttgatttgggcaaggaaaaactgatgg |
190 |
Q |
| |
|
||||| |||| ||||||||||| ||||| ||||||| ||||| |||||||||||||| ||||||||||||||| |
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| T |
32630681 |
agatacaaaccagtgattagtggcgagttaaaatgcggcaaaagacttgatttgggcgaggaaaaactgatgg |
32630753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 632
Target Start/End: Original strand, 32631172 - 32631209
Alignment:
| Q |
595 |
aattaattgcagcttctccaatttcttcctcaaatggc |
632 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32631172 |
aattaattgcagcttctacaatttcttcctcaaatggc |
32631209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 568
Target Start/End: Original strand, 32599901 - 32599965
Alignment:
| Q |
503 |
aaagtgctccgactaaacggctagggttacagcacaaatgtagtcgaaaagtgaaaacaaagtttt |
568 |
Q |
| |
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|||| |||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||| |
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| T |
32599901 |
aaagcgctccgactaaacggcta-gtttacagcacaaatgctgtcctgaagtgaaaacaaagtttt |
32599965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 427 - 520
Target Start/End: Original strand, 41163515 - 41163608
Alignment:
| Q |
427 |
ttccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagtgctccgactaaac |
520 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
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|
| T |
41163515 |
ttcctaagtcaaagacctgccacaaataaaatttgtaaatttaacttacaaatgtctaaataaaaccataaacttgaaagcgcttcgactaaac |
41163608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 298
Target Start/End: Original strand, 41160941 - 41161095
Alignment:
| Q |
147 |
aaaatgcagcaaacgacttgatttgggcaaggaaaaactgatggtagttggcatagggaaggaatccatgttggatgttggaggtgg---aaggtgagag |
243 |
Q |
| |
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|||||||||| | |||||||||||| | ||||||||||| | || ||||||| |||||||||||||||| |||| |||| ||||| |||||||||| |
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| T |
41160941 |
aaaatgcagcggaagacttgatttggtcgaggaaaaactggtcgttgttggcaaagggaaggaatccatgcaggatattggtggtggaacaaggtgagag |
41161040 |
T |
|
| Q |
244 |
gcagtgggggtgaagagtggtgaaggaaatggaggaaatcccaaaagatagggaa |
298 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||| ||||| ||||||||| |
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|
| T |
41161041 |
gcagtggggttgaagagatcctaataaaatggaggaaataccaaaggatagggaa |
41161095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 424 - 507
Target Start/End: Original strand, 41171327 - 41171410
Alignment:
| Q |
424 |
ctattccaaagtcaaagacctgccacaaataaactatttaaatttaacttacaaatgtctaaataaaaccataaacttcaaagt |
507 |
Q |
| |
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||||| ||||||||||||||||||||||||||| | | ||||||||| |||||||| | || ||||||||||||||| ||||| |
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| T |
41171327 |
ctatttcaaagtcaaagacctgccacaaataaaatttgtaaatttaatttacaaattaccaactaaaaccataaacttgaaagt |
41171410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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