View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1744_low_2 (Length: 335)
Name: NF1744_low_2
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1744_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 34117224 - 34116967
Alignment:
| Q |
8 |
agagatgaaggacatcccgagttcgaatcagcacccaatcaaattaaatgtcgtcgtaactttttaccaattgagttactcttactagagtctagtttta |
107 |
Q |
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| T |
34117224 |
agagatgaaggacatcccgaattcgaatctgcacccaatcaaataaaatgtcgtcataactttttaccaattgagttagtcttactagagtctagtttta |
34117125 |
T |
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| Q |
108 |
ttttttattagataaaaatttacactaacgtgatttttacattggtggtgaaattgaaattaacttccttagaagatatgagctaaatatcaagtaattc |
207 |
Q |
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| T |
34117124 |
tttttta---------------cactaacgtgatttttacattggtagtgaaattcaaattaacttccttagaagatatgagctaaatatcaagtaattc |
34117040 |
T |
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| Q |
208 |
aacttattcaagaaaatgtcaactttttcataattaaggggtgaaaagatttcaagtaattgtgacaatagtg |
280 |
Q |
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| T |
34117039 |
aacttattcaataaaatgtcaactttttcataattaaggggtgaaaagatttcaagtaattgtgacaatagtg |
34116967 |
T |
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