View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1744_low_3 (Length: 317)
Name: NF1744_low_3
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1744_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 3261827 - 3262143
Alignment:
| Q |
1 |
gtatttcccttcatttgtgtcatcgccatagctt-gaaggacaaaggccaagtgactcttgcttcacgaaattttccgctaggatcccattgcttgaaag |
99 |
Q |
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| T |
3261827 |
gtatttcccttcattggtgtcatcgccatagctttgaaggacaaaggccaagtgacacttgcttcacgaaattttccgctaggatcccattgcttgaaag |
3261926 |
T |
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| Q |
100 |
ttggtgatggcggaaatagtgtgaacccatcatcaattcctcttggatcaaatgtaattttcataaaataaggtatgagaaaatatgtaaaaggaaaatt |
199 |
Q |
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| T |
3261927 |
ttggtaatggcggaaatagtgtgaacccatcatcaattcctcttggatcaaatgtaattttcataaaataaggtatgagaaaatatgtaaaaggaaaatt |
3262026 |
T |
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| Q |
200 |
tgtagcatccactcatgcatttgaaccaataaacttagattataagttttcacaatttttaacatttatggtgagagnnnnnnnnttcaaatgaatttcc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3262027 |
tgtagcatccactcatgcatttgaaccaataaacttagattataagttttcacaatttttaacatttatggtgaga-aaaaaaaattcaaatgaatttcc |
3262125 |
T |
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| Q |
300 |
gcttcacttgttcatttc |
317 |
Q |
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|||||||||||||||||| |
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| T |
3262126 |
gcttcacttgttcatttc |
3262143 |
T |
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