View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1744_low_4 (Length: 316)

Name: NF1744_low_4
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1744_low_4
NF1744_low_4
[»] chr5 (12 HSPs)
chr5 (172-269)||(43259697-43259794)
chr5 (184-269)||(35996031-35996116)
chr5 (187-262)||(5791986-5792060)
chr5 (194-269)||(29445308-29445383)
chr5 (217-269)||(27514339-27514391)
chr5 (222-269)||(19914530-19914577)
chr5 (172-211)||(27514382-27514421)
chr5 (187-229)||(10476390-10476432)
chr5 (189-267)||(39797253-39797331)
chr5 (223-268)||(5131113-5131158)
chr5 (182-227)||(5131261-5131306)
chr5 (182-234)||(43259844-43259896)
[»] chr4 (18 HSPs)
chr4 (172-269)||(42540332-42540429)
chr4 (182-268)||(7672740-7672824)
chr4 (187-262)||(19677763-19677838)
chr4 (188-269)||(19747365-19747445)
chr4 (188-269)||(19792361-19792441)
chr4 (198-269)||(3257599-3257670)
chr4 (202-268)||(21188269-21188335)
chr4 (217-266)||(23780470-23780519)
chr4 (208-268)||(4622078-4622138)
chr4 (187-246)||(10382038-10382097)
chr4 (201-269)||(43364069-43364137)
chr4 (227-267)||(48141132-48141172)
chr4 (218-268)||(14126431-14126481)
chr4 (172-268)||(10395256-10395352)
chr4 (182-226)||(20678400-20678444)
chr4 (182-234)||(23780317-23780369)
chr4 (179-215)||(43364103-43364139)
chr4 (217-261)||(48284161-48284205)
[»] chr3 (6 HSPs)
chr3 (182-268)||(55216628-55216714)
chr3 (184-269)||(26661868-26661953)
chr3 (201-269)||(40654257-40654325)
chr3 (179-262)||(41264963-41265046)
chr3 (221-269)||(8473121-8473169)
chr3 (181-269)||(25653328-25653416)
[»] chr7 (8 HSPs)
chr7 (186-269)||(23777260-23777343)
chr7 (182-268)||(42731206-42731292)
chr7 (182-267)||(10596230-10596315)
chr7 (200-269)||(20336027-20336096)
chr7 (201-269)||(19367294-19367362)
chr7 (182-263)||(33247033-33247114)
chr7 (191-223)||(31305384-31305416)
chr7 (221-269)||(43341199-43341247)
[»] chr6 (10 HSPs)
chr6 (184-266)||(18271901-18271983)
chr6 (182-268)||(12852066-12852152)
chr6 (187-269)||(20116230-20116312)
chr6 (188-269)||(33590873-33590954)
chr6 (182-229)||(20836824-20836871)
chr6 (208-267)||(31350951-31351010)
chr6 (222-269)||(9619425-9619472)
chr6 (183-234)||(18271769-18271820)
chr6 (223-267)||(14569729-14569773)
chr6 (182-234)||(33427735-33427787)
[»] chr1 (10 HSPs)
chr1 (179-269)||(44011913-44012003)
chr1 (182-260)||(5993782-5993860)
chr1 (186-262)||(45376614-45376690)
chr1 (182-268)||(36928193-36928279)
chr1 (172-232)||(8812543-8812603)
chr1 (179-234)||(45376473-45376529)
chr1 (191-263)||(47930944-47931011)
chr1 (192-269)||(11619225-11619302)
chr1 (202-263)||(22786467-22786528)
chr1 (197-257)||(28116056-28116116)
[»] chr2 (8 HSPs)
chr2 (182-269)||(27080871-27080953)
chr2 (182-268)||(1483904-1483990)
chr2 (207-269)||(2375976-2376038)
chr2 (187-261)||(31099027-31099101)
chr2 (190-241)||(7836756-7836807)
chr2 (180-248)||(33381846-33381909)
chr2 (202-269)||(14108567-14108634)
chr2 (197-263)||(36330308-36330374)
[»] chr8 (4 HSPs)
chr8 (187-269)||(36700023-36700105)
chr8 (182-261)||(18605382-18605461)
chr8 (196-262)||(30595599-30595665)
chr8 (172-212)||(387738-387778)
[»] scaffold0024 (1 HSPs)
scaffold0024 (172-267)||(60197-60292)
[»] scaffold0603 (1 HSPs)
scaffold0603 (183-225)||(7308-7350)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 43259794 - 43259697
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43259794 tttagttaccgaactgaactgtttcgaatcgaactaaactgtttcgaactgaactgaattgtttcagttcaatttcagaactgttagtaattgttcag 43259697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 35996031 - 35996116
Alignment:
Q  184 actgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||||||||||||| |||||||||||||||||||  || |||||||||||| |||||||| |||||||||||||||||    
T  35996031 actgaactgtttcgaatcgaaccaaactgttttgaactgaacaaaactgtttcagttcagtttcagaattgttagtaatggttcag 35996116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 5791986 - 5792060
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaat 262  Q
    |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||| |||||||||||||| ||||    
T  5791986 gaactgtttcgaatcgaactgaactgttttgaaccgaactgaactgtttca-ttcagtttcagaactgttaataat 5792060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 29445308 - 29445383
Alignment:
Q  194 ttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||| ||||||||||||||||||  || |||||||||||| |||||||| ||| |||||| ||||||    
T  29445308 ttcgaatcgaactgaactgttttgaactgaacctaactgtttcagttcagtttcagaattgtaagtaatagttcag 29445383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 27514391 - 27514339
Alignment:
Q  217 gaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  27514391 gaactgaacttaactgtttcagttcagtttcagaactgttagtaatggttcag 27514339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 19914530 - 19914577
Alignment:
Q  222 gaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  19914530 gaactgaactgtttcagttcagtttcagaactgttagtaatggttcag 19914577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 27514421 - 27514382
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaact 211  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  27514421 tttagttaccgaactgaactgtttcgaatcgaactgaact 27514382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 10476432 - 10476390
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaa 229  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  10476432 gaactgtttcgaatcgaactgaactgttttgaaccgaactgaa 10476390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 39797331 - 39797253
Alignment:
Q  189 actgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttc 267  Q
    ||||||||||| |||||  |||||||||||||| ||  ||| | ||| ||||||||| || |||||||| |||||||||    
T  39797331 actgtttcgaaccgaaccgaactgttttgaactaaatcgaactattttagttcaattccataactgttaataatggttc 39797253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5131158 - 5131113
Alignment:
Q  223 aactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    ||||||| |||||||||||| |||||||||| |||||||| |||||    
T  5131158 aactgaactgtttcagttcagtttcagaactattagtaatagttca 5131113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 5131306 - 5131261
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactg 227  Q
    ||||||||||||||| || |||||| |||||||| |||||||||||    
T  5131306 gaactgaactgtttcaaaccgaactgaactgtttcgaactgaactg 5131261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 43259896 - 43259844
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtt 234  Q
    ||||||||||||||| || |||||| |||||||  ||||||||||||| ||||    
T  43259896 gaactgaactgtttcaaaccgaactgaactgttccgaactgaactgaactgtt 43259844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 42540332 - 42540429
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||    
T  42540332 tttagttaccgaactgaactgtttcaagtcgaactgaactgttttgaattgaactgaattgcttcagtccagtttcagaactgttagtaatggttcag 42540429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 7672740 - 7672824
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||||||||||||||  |||||||| |||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  7672740 gaactgaactgtttc--atcgaactgaactattttgaattgaactgaattgtttcagttcagtttcacaactgttagtaatggttca 7672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 19677838 - 19677763
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaat 262  Q
    ||||||||| |||||||||||||||||||||||| ||| |||| | |||||||||| ||||| |||||||||||||    
T  19677838 gaactgttttgaatcgaactaaactgttttgaaccgaattgaactatttcagttcagtttcaaaactgttagtaat 19677763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 19747445 - 19747365
Alignment:
Q  188 aactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||| ||| |||| ||||| |||||||| |||| |||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  19747445 aactattttgaatagaactgaactgtttcgaacagaactgaactgtt-cagttcagtttcagaactgttagtaatggttcag 19747365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 19792361 - 19792441
Alignment:
Q  188 aactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||| ||| |||| ||||| |||||||| |||| |||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  19792361 aactattttgaatagaactgaactgtttcgaacagaactgaactgtt-cagttcagtttcagaactgttagtaatggttcag 19792441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 3257670 - 3257599
Alignment:
Q  198 aatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||| |||||||||||| ||||| ||| |||||||||||| ||||| |||||||| ||||| |||||    
T  3257670 aatcgaactgaactgttttgaaatgaaccgaactgtttcagttcagtttcaaaactgttaataatgattcag 3257599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 21188269 - 21188335
Alignment:
Q  202 gaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||| |||||| ||||||| ||||  || ||||||||||| ||| ||||||||||||||||||||||    
T  21188269 gaaccaaactgatttgaaccgaaccaaaatgtttcagttccattccagaactgttagtaatggttca 21188335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 23780470 - 23780519
Alignment:
Q  217 gaactgaactgaattgtttcagttcaatttcagaactgttagtaatggtt 266  Q
    ||||||||||||| |||||||||||| || |||||| |||||||||||||    
T  23780470 gaactgaactgaactgtttcagttcagttccagaacggttagtaatggtt 23780519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 4622078 - 4622138
Alignment:
Q  208 aactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    ||||||||||||||||||  || |||||||||||| || || |||||||||||||| ||||    
T  4622078 aactgttttgaactgaaccaaactgtttcagttcagttccataactgttagtaatgattca 4622138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 10382038 - 10382097
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactg-aattgtttcagttcaattt 246  Q
    |||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||    
T  10382038 gaactgtttcgaatcgaactgaattgttttgaact-aactgaaactgtttcagttcaattt 10382097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 43364137 - 43364069
Alignment:
Q  201 cgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||| ||||||||||||  |||||||| ||||||| |||| ||| ||||| |||| |||||||||||    
T  43364137 cgaactgaactgttttgaatcgaactgaactgtttcaattcagttttagaaccgttaataatggttcag 43364069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 48141172 - 48141132
Alignment:
Q  227 gaattgtttcagttcaatttcagaactgttagtaatggttc 267  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  48141172 gaattgtttcagttcagtttcagaattgttagtaatggttc 48141132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 14126431 - 14126481
Alignment:
Q  218 aactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||| ||| ||| |||||||||||| |||||||| ||||||||||||||||    
T  14126431 aactaaacggaactgtttcagttcagtttcagaattgttagtaatggttca 14126481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 10395352 - 10395256
Alignment:
Q  172 tttagttaccgaactgaact-----gtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggtt 266  Q
    |||| |||||||||||||||     ||||| ||||||||| |||||||| | |||||||     |||||||||||| ||| | |||||||||||||||||    
T  10395352 tttaattaccgaactgaactgaacagtttcaaatcgaactgaactgtttaggactgaac-----tgtttcagttcagtttgaaaactgttagtaatggtt 10395258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 20678400 - 20678444
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaact 226  Q
    |||| ||||| ||||||||| |||| |||||||||||||||||||    
T  20678400 gaaccgaactatttcgaatccaactgaactgttttgaactgaact 20678444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 23780317 - 23780369
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtt 234  Q
    ||||||||||||||| || | |||| |||||||| ||||||||| ||||||||    
T  23780317 gaactgaactgtttcaaaccaaactgaactgtttcgaactgaaccgaattgtt 23780369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 43364139 - 43364103
Alignment:
Q  179 accgaactgaactgtttcgaatcgaactaaactgttt 215  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  43364139 accgaactgaactgttttgaatcgaactgaactgttt 43364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 48284205 - 48284161
Alignment:
Q  217 gaactgaactgaattgtttcagttcaatttcagaactgttagtaa 261  Q
    |||| |||||||| |||||||||||||||| |||| |||||||||    
T  48284205 gaaccgaactgaactgtttcagttcaattttagaattgttagtaa 48284161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 55216714 - 55216628
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  55216714 gaactggactgtttcgaatcgaactgaactattttgaactgaactgaactgtttcagttcagtttcagaactgttagtaatggttca 55216628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 26661953 - 26661868
Alignment:
Q  184 actgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||| ||||  |||||||| |||||||||||    
T  26661953 actgaactgttttaaatcgaactaaactattttgaactgaactgaattgtttctgttcagtttccaaactgttaataatggttcag 26661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 40654257 - 40654325
Alignment:
Q  201 cgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||| || |||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||    
T  40654257 cgaactgaattgttttgaactgaactaaactgtttcagttcagtttcaaaactgttagtaatagttcag 40654325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 41264963 - 41265046
Alignment:
Q  179 accgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaat 262  Q
    |||||||  |||||||| ||||||| || ||||||||| ||||||| |||| |||||||||||||||||| || ||| ||||||    
T  41264963 accgaaccaaactgttttgaatcgagctgaactgttttaaactgaattgaactgtttcagttcaatttcaaaattgtcagtaat 41265046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 8473169 - 8473121
Alignment:
Q  221 tgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  8473169 tgaattgaactgtttcagttcagtttcagaactgttagtaatggttcag 8473121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 25653416 - 25653328
Alignment:
Q  181 cgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||| ||||| ||||||| | |||| || |||||||||| |||| ||| ||||||| |||| |||| ||||||| |||||||||||||    
T  25653416 cgaaccgaactatttcgaaccaaactgaaatgttttgaaccgaaccgaactgtttcaattcagtttcggaactgtcagtaatggttcag 25653328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 269
Target Start/End: Original strand, 23777260 - 23777343
Alignment:
Q  186 tgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||||||||||| ||||||||||||  |||||||| |||||||||||| |||||||||||||||||||| |||||    
T  23777260 tgaactgtttcgaatcgaactgaactgttttgaaaagaactgaactgtttcagttcagtttcagaactgttagtaatgattcag 23777343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 42731206 - 42731292
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||||    
T  42731206 gaactgaactgtttcgaatcgaatcaaactgtttcgaactgaaccgaattgtttcaattcaatttcagtactgttagtaatagttca 42731292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 10596230 - 10596315
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttc 267  Q
    |||||||||||||| |||||||| | |||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||    
T  10596230 gaactgaactgttttgaatcgaattgaactgttttgaactaaactgaactgtttcagttaagtttcagaactgttagtaatggttc 10596315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 20336027 - 20336096
Alignment:
Q  200 tcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || || |||||||||||||| |||||    
T  20336027 tcgaactaaactattttgaactgaaccgaattgtttcagttcagttccataactgttagtaatgattcag 20336096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 19367294 - 19367362
Alignment:
Q  201 cgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||| ||||||||| |||||||||||| ||||| |||||| ||||||||||||| ||||||||||||    
T  19367294 cgaactgaactgttttcaactgaactgaactgtttaagttcagtttcagaactgttggtaatggttcag 19367362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 33247114 - 33247033
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatg 263  Q
    |||| ||||||||| ||||||||||||| ||||||||| |||||  ||| |||| |||||| ||| |||| |||||||||||    
T  33247114 gaaccgaactgttttgaatcgaactaaattgttttgaattgaaccaaatcgtttaagttcatttttagaattgttagtaatg 33247033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 31305384 - 31305416
Alignment:
Q  191 tgtttcgaatcgaactaaactgttttgaactga 223  Q
    |||||||||||||||| ||||||||||||||||    
T  31305384 tgtttcgaatcgaactgaactgttttgaactga 31305416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 43341199 - 43341247
Alignment:
Q  221 tgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||| |||||||||||||||||| || |||| ||||| ||||||    
T  43341199 tgaactgaactgtttcagttcaatttcataattgtttgtaatagttcag 43341247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 18271901 - 18271983
Alignment:
Q  184 actgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggtt 266  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| || |||||||||  ||||||||||||||||||||||    
T  18271901 actgaactgtttcgaatcgaactgaactattttgaactgaattgaactgcttcagttcagattcagaactgttagtaatggtt 18271983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 12852152 - 12852066
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||| |||||||||| ||||||||| |||| |||||||| |||| ||| |||||||||||| |||||||| |||| ||||| |||||    
T  12852152 gaaccgaactgtttcaaatcgaactgaactattttgaaccgaaccgaactgtttcagttcagtttcagaattgttggtaatagttca 12852066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 20116312 - 20116230
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||||| ||||| |||| |||| ||  |||||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  20116312 gaactgtttcgaatggaactgaacttttttaaaacgaactgaactgttttagttcaatttcaaaactgttagtaatagttcag 20116230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 33590873 - 33590954
Alignment:
Q  188 aactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||| |||| |||| ||||||||||||| |||||||||||||  |||||||||| |||| ||||| |||| ||||||    
T  33590873 aactgtttctaatcaaacttaactgttttgaaccgaactgaattgttgtagttcaatttaagaattgttaataatagttcag 33590954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 20836824 - 20836871
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaa 229  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  20836824 gaactgaactgtttcgaatcgaattgaactgttttgaactggactgaa 20836871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 31351010 - 31350951
Alignment:
Q  208 aactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttc 267  Q
    ||||||||||||  |||| ||| |||||| ||||| ||||||||||||||||||||||||    
T  31351010 aactgttttgaatcgaaccgaactgtttccgttcagtttcagaactgttagtaatggttc 31350951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 9619472 - 9619425
Alignment:
Q  222 gaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||||| | |||| |||||||| |||||||||||||||||    
T  9619472 gaactgaattgttttatttcagtttcagaattgttagtaatggttcag 9619425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 18271769 - 18271820
Alignment:
Q  183 aactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtt 234  Q
    |||||||||||||| || |||||| |||||||  ||||||||||||||||||    
T  18271769 aactgaactgtttcaaaccgaactgaactgttccgaactgaactgaattgtt 18271820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 14569773 - 14569729
Alignment:
Q  223 aactgaattgtttcagttcaatttcagaactgttagtaatggttc 267  Q
    ||||||| ||||||| |||||||| ||||||||||||||| ||||    
T  14569773 aactgaactgtttcatttcaattttagaactgttagtaatagttc 14569729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 33427735 - 33427787
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtt 234  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||| ||| ||||    
T  33427735 gaactgaactgtttcaaatcgaattaaactgttccgaactgaaccgaactgtt 33427787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 44011913 - 44012003
Alignment:
Q  179 accgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||||||||||| |||||  || ||||||||||||||| ||||||||| | || |||||||||||| |||||||||||||||    
T  44011913 accgaactgaactgtttcgaaccgaaccgaattgttttgaactgaaccgaattgttttaatttaatttcagaacttttagtaatggttcag 44012003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 5993782 - 5993860
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagta 260  Q
    |||| |||||||||||||||||| | ||||||||||||| |||||||| |||||||||||| |||||||| ||||||||    
T  5993782 gaaccgaactgtttcgaatcgaattgaactgttttgaaccgaactgaactgtttcagttcagtttcagaattgttagta 5993860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 45376614 - 45376690
Alignment:
Q  186 tgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaat 262  Q
    |||||| ||||||||| |||| |||||||||||||||||||||| ||| |||||||| ||||| ||||||| |||||    
T  45376614 tgaactatttcgaatcaaactgaactgttttgaactgaactgaactgtatcagttcagtttcaaaactgttggtaat 45376690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 36928193 - 36928279
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||| ||||| |||| || |||||  |||||||||||||||||| ||||| ||| |||||| ||  |||| ||||||||||||||||    
T  36928193 gaaccgaactatttcaaaccgaaccgaactgttttgaactgaaccgaattattttagttcagttctagaattgttagtaatggttca 36928279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8812543 - 8812603
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattg 232  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| |||  |||||| ||||    
T  8812543 tttagttaccgaactgaactgtttcaaattgaactgaactgtttcgaatcgaactgtattg 8812603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 45376473 - 45376529
Alignment:
Q  179 accgaactgaactgtttcgaatcgaactaaac-tgttttgaactgaactgaattgtt 234  Q
    |||||||||||||||| ||||||||||| ||| | ||||||||||||||||| ||||    
T  45376473 accgaactgaactgttccgaatcgaactgaactttttttgaactgaactgaactgtt 45376529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 47930944 - 47931011
Alignment:
Q  191 tgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatg 263  Q
    ||||||||||||||||||| | ||||| |||||||||     |||||||||| |||||||| |||||||||||    
T  47930944 tgtttcgaatcgaactaaattattttgtactgaactg-----tttcagttcagtttcagaattgttagtaatg 47931011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 11619302 - 11619225
Alignment:
Q  192 gtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||| ||||||||| |||||| |||| ||| ||| | |||||||||| || || || ||||| |||||||||||    
T  11619302 gtttcgaaacgaactaaattgttttaaactaaaccgaactatttcagttcagttccaaaattgttaataatggttcag 11619225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 22786528 - 22786467
Alignment:
Q  202 gaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatg 263  Q
    |||| |||||||||||||| |||||||| ||||| ||||||  |||| || |||||||||||    
T  22786528 gaaccaaactgttttgaaccgaactgaactgtttgagttcagcttcaaaattgttagtaatg 22786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 28116056 - 28116116
Alignment:
Q  197 gaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgtta 257  Q
    |||||||||| ||||||||||||| |||| ||| ||||| |||||| ||| |||| |||||    
T  28116056 gaatcgaactgaactgttttgaaccgaaccgaactgttttagttcagttttagaattgtta 28116116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 27080953 - 27080871
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||     |||||||||||| ||||  ||||||||||||||||||||    
T  27080953 gaactgaactgtttcgaatcgaactgaactgttttgaactgaac-----tgtttcagttcagtttcttaactgttagtaatggttcag 27080871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 1483990 - 1483904
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttca 268  Q
    |||| |||||||||| ||||||||  ||||||||||||| ||||| |||||||||| |||| |||||||| ||||||||||||||||    
T  1483990 gaaccgaactgtttcaaatcgaacggaactgttttgaaccgaactaaattgtttcaattcagtttcagaattgttagtaatggttca 1483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 2375976 - 2376038
Alignment:
Q  207 aaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||||    
T  2375976 aaactgttttgaactgaaccaaattgtttcagttcaatttcagaattgttagtaatagttcag 2376038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 31099027 - 31099101
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaa 261  Q
    |||||||||||||| ||||  |||||||||||||||||| ||| ||||| |||||| |||||||| |||||||||    
T  31099027 gaactgtttcgaattgaaccgaactgttttgaactgaaccgaactgttttagttcagtttcagaattgttagtaa 31099101  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 7836807 - 7836756
Alignment:
Q  190 ctgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttc 241  Q
    ||||||||||||||| | |||||||||||| |||||||||||||||||||||    
T  7836807 ctgtttcgaatcgaattgaactgttttgaaatgaactgaattgtttcagttc 7836756  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 33381909 - 33381846
Alignment:
Q  180 ccgaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttca 248  Q
    ||||||||||||||||||||| ||||| || ||||||||||     |||||||||||||||||||||||    
T  33381909 ccgaactgaactgtttcgaattgaactgaattgttttgaac-----tgaattgtttcagttcaatttca 33381846  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 14108634 - 14108567
Alignment:
Q  202 gaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||| || ||||| ||||  ||||||||||||| |||| | ||||||||||||||||||||||||||    
T  14108634 gaactgaattgtttcgaaccaaactgaattgtttgagttaagtttcagaactgttagtaatggttcag 14108567  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 36330374 - 36330308
Alignment:
Q  197 gaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatg 263  Q
    |||||||||| || |||||||||| |||| ||| |||||| ||||| |||||||| |||||||||||    
T  36330374 gaatcgaactgaattgttttgaaccgaaccgaactgtttctgttcagtttcagaattgttagtaatg 36330308  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 36700105 - 36700023
Alignment:
Q  187 gaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggttcag 269  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||||||||| |||||| ||| |||| |||||||||| ||||||    
T  36700105 gaactgtatcgaatcgaaccaaactgttttgaaatgaaccgaattgttttagttcagttttagaattgttagtaatagttcag 36700023  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 18605382 - 18605461
Alignment:
Q  182 gaactgaactgtttcgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaa 261  Q
    ||||||||||||| ||||   ||| |||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||    
T  18605382 gaactgaactgttccgaacttaaccaaactgttttgaaccgaactgaattgtttcagttcagtttcagaattgtcagtaa 18605461  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 30595599 - 30595665
Alignment:
Q  196 cgaatcgaactaaactgttttgaactgaactgaattgtttcagttcaatttcagaactgttagtaat 262  Q
    ||||| ||||| ||||||||||||  |||||| | |||||||||||| |||||||||| ||||||||    
T  30595599 cgaattgaactgaactgttttgaatcgaactgtactgtttcagttcagtttcagaactattagtaat 30595665  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 387738 - 387778
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaactg 212  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  387738 tttagttacaaaactgaactgtttcgaatcgaactgaactg 387778  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 60197 - 60292
Alignment:
Q  172 tttagttaccgaactgaactgtttcgaatcgaactaaactgtt-----ttgaactgaactgaattgtttcagttcaatttcagaactgttagtaatggtt 266  Q
    ||||||||| ||||||||||||| ||||  ||||| |||||||     | ||||||||||||||||||||||     |||||||||| ||||||||||||    
T  60197 tttagttacagaactgaactgttccgaactgaactgaactgtttcgaatcgaactgaactgaattgtttcag-----tttcagaactattagtaatggtt 60291  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 7308 - 7350
Alignment:
Q  183 aactgaactgtttcgaatcgaactaaactgttttgaactgaac 225  Q
    |||||||||||||||||||||||| |||||||| |||| ||||    
T  7308 aactgaactgtttcgaatcgaactgaactgtttcgaaccgaac 7350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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