View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1744_low_5 (Length: 291)
Name: NF1744_low_5
Description: NF1744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1744_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 26654576 - 26654315
Alignment:
| Q |
17 |
ttttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26654576 |
ttttctccctcaaatccattaaacgtaacatctcttcttgttgtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaat |
26654477 |
T |
|
| Q |
117 |
cacaacttcatcatctctttcttttctttcttcaacaatttctttagctccttcagccatatcagaatgctgcacaacagttgctttgtttttgaaagca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
26654476 |
cacaacttcatcatctctttcttttctttcttcaacaatttctttagctccttcagccatatcagaatgttgcacaacagttactttgtttttgaaagca |
26654377 |
T |
|
| Q |
217 |
tagctatgactttcaccttgagtctcagataaaaaggctctgttactagacttccgtgcttc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
26654376 |
tagctatgactttcaccttgagtctcagataaaaaggctctgtcattagacttccatgcttc |
26654315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 20014849 - 20014967
Alignment:
| Q |
26 |
tcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatcacaacttc |
125 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||| ||| | | ||||||||||||||||||||| ||||||||| || |||| || | |||| |
|
|
| T |
20014849 |
tcaaatccattagccgtaacatctcatcttgttgtcttgccagaagcctgagttcctcttgattcttcaagtattgctcttttaagaaaaccaaagcttc |
20014948 |
T |
|
| Q |
126 |
atcatctctttcttttctt |
144 |
Q |
| |
|
|| ||| |||||||||||| |
|
|
| T |
20014949 |
atgatcactttcttttctt |
20014967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 19990645 - 19990518
Alignment:
| Q |
55 |
tgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatcacaacttcatcatctctttcttttctttcttcaacaa |
154 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||| || |||||| || |||| | || |||||||| ||||||||||||||| || |
|
|
| T |
19990645 |
tgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaagaaaactaatacatcatcatcactttcttttctttctataagtg |
19990546 |
T |
|
| Q |
155 |
tttctttagctccttcagccatatcaga |
182 |
Q |
| |
|
||| |||||||||| ||||||||||||| |
|
|
| T |
19990545 |
tttgtttagctcctgcagccatatcaga |
19990518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 26648574 - 26648453
Alignment:
| Q |
19 |
ttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatca |
118 |
Q |
| |
|
|||||| ||||||| ||||| | || |||| ||||||||||||||| || || | ||||||||||| ||||||||| | ||||||| || |||| || |
|
|
| T |
26648574 |
ttctccttcaaatctattaactgaaacatcttttcttgttgtcttgccaggcgcctgagttcctcttggttcttcaagtatagctcttttaacaaaacca |
26648475 |
T |
|
| Q |
119 |
caacttcatcatctctttcttt |
140 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
26648474 |
caacttcatgatcactttcttt |
26648453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 20006940 - 20007001
Alignment:
| Q |
46 |
atctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctcttt |
107 |
Q |
| |
|
||||| |||||||||||||| ||| | || ||||||||||||||||||||| ||||||||| |
|
|
| T |
20006940 |
atctcctcttgttgtcttgccagatgcgtgagttcctcttgattcttcaagtattgctcttt |
20007001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 20032947 - 20033024
Alignment:
| Q |
19 |
ttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaag |
96 |
Q |
| |
|
|||||||||||| || |||||| || |||||||| ||||||||||||| | | | ||||||||||||||||||||| |
|
|
| T |
20032947 |
ttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgctacatgcttgagttcctcttgattcttcaag |
20033024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 1718607 - 1718478
Alignment:
| Q |
19 |
ttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatca |
118 |
Q |
| |
|
||||||| |||| ||||||| ||||| |||||||| ||||||||||| ||||||| || |||||||||||||||| || || |||||| || |||| || |
|
|
| T |
1718607 |
ttctcccacaaacccattaaccgtaacatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattcctcttttaacaaaacca |
1718508 |
T |
|
| Q |
119 |
caacttcatcatctctttcttttctttctt |
148 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |
|
|
| T |
1718507 |
taacttcatcatctcttgcttccctttctt |
1718478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 26353571 - 26353696
Alignment:
| Q |
19 |
ttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatca |
118 |
Q |
| |
|
|||||| || |||| ||||||||||| |||||||| ||||||||||| ||||| | ||||||||||||| ||||||| ||||||||| || ||| || |
|
|
| T |
26353571 |
ttctccttcgaatctattaatcgtaacatctcttcctgttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaacca |
26353670 |
T |
|
| Q |
119 |
caacttcatcatctctttcttttctt |
144 |
Q |
| |
|
||| ||||| ||| |||||||||||| |
|
|
| T |
26353671 |
caagttcatgatcactttcttttctt |
26353696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 9816511 - 9816386
Alignment:
| Q |
19 |
ttctccctcaaatccattaatcgtaatatctcttcttgttgtcttgctagacgtgtcagttcctcttgattcttcaagctttgctctttcaataaaatca |
118 |
Q |
| |
|
|||||| ||||||| ||||| | || |||||||||||||||||||| | ||| | ||||||| ||||| ||||||| ||||||||| || ||| || |
|
|
| T |
9816511 |
ttctccttcaaatctattaactgaaacatctcttcttgttgtcttgccaaacgcctaagttccttttgatccttcaagtgttgctcttttaaccaaacca |
9816412 |
T |
|
| Q |
119 |
caacttcatcatctctttcttttctt |
144 |
Q |
| |
|
||| |||| ||| |||||||||||| |
|
|
| T |
9816411 |
gaacatcatgatcactttcttttctt |
9816386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University