View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1745-Insertion-4 (Length: 166)

Name: NF1745-Insertion-4
Description: NF1745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1745-Insertion-4
NF1745-Insertion-4
[»] chr4 (11 HSPs)
chr4 (8-166)||(21539254-21539412)
chr4 (65-158)||(1152060-1152154)
chr4 (65-158)||(1684942-1685036)
chr4 (65-162)||(4904126-4904224)
chr4 (35-162)||(47066020-47066155)
chr4 (35-162)||(53300330-53300465)
chr4 (65-162)||(4881055-4881153)
chr4 (65-162)||(43600283-43600381)
chr4 (66-125)||(24559019-24559078)
chr4 (65-125)||(48464056-48464116)
chr4 (65-162)||(37750976-37751073)
[»] chr5 (18 HSPs)
chr5 (35-162)||(17037522-17037657)
chr5 (65-162)||(30786283-30786381)
chr5 (65-162)||(5079050-5079148)
chr5 (65-125)||(12042201-12042261)
chr5 (67-162)||(19985013-19985109)
chr5 (65-162)||(7410840-7410938)
chr5 (65-162)||(23679457-23679555)
chr5 (65-162)||(23855256-23855354)
chr5 (34-125)||(31068987-31069084)
chr5 (65-125)||(9333585-9333645)
chr5 (70-147)||(10869458-10869535)
chr5 (65-114)||(18191884-18191933)
chr5 (80-144)||(42076078-42076143)
chr5 (65-125)||(9354413-9354473)
chr5 (78-162)||(37233061-37233146)
chr5 (65-125)||(40402033-40402093)
chr5 (72-110)||(31571052-31571090)
chr5 (70-111)||(16411611-16411652)
[»] chr8 (19 HSPs)
chr8 (34-162)||(5528721-5528857)
chr8 (65-162)||(19369896-19369994)
chr8 (65-162)||(17634457-17634555)
chr8 (65-162)||(19448464-19448562)
chr8 (65-162)||(19532514-19532612)
chr8 (65-162)||(28249061-28249159)
chr8 (65-162)||(45356098-45356196)
chr8 (70-162)||(6801816-6801909)
chr8 (65-162)||(25638823-25638921)
chr8 (65-143)||(31347365-31347444)
chr8 (65-162)||(18766933-18767031)
chr8 (34-162)||(25637622-25637758)
chr8 (65-125)||(6403609-6403669)
chr8 (65-125)||(29345447-29345507)
chr8 (70-162)||(5650931-5651024)
chr8 (65-125)||(29553645-29553705)
chr8 (70-162)||(14997642-14997735)
chr8 (69-162)||(31369092-31369186)
chr8 (82-158)||(6223434-6223511)
[»] chr7 (14 HSPs)
chr7 (65-162)||(9242470-9242568)
chr7 (73-162)||(26608525-26608615)
chr7 (65-162)||(26621077-26621175)
chr7 (70-162)||(30089756-30089849)
chr7 (65-161)||(26619091-26619187)
chr7 (65-160)||(20277348-20277444)
chr7 (65-162)||(4685389-4685487)
chr7 (65-162)||(26224964-26225062)
chr7 (35-161)||(26205402-26205536)
chr7 (65-162)||(10022140-10022238)
chr7 (73-122)||(3374325-3374374)
chr7 (65-125)||(16170287-16170347)
chr7 (78-147)||(27135958-27136028)
chr7 (65-129)||(8241614-8241677)
[»] chr6 (21 HSPs)
chr6 (65-162)||(11936753-11936851)
chr6 (65-162)||(11948733-11948831)
chr6 (65-162)||(16734821-16734919)
chr6 (65-162)||(6684110-6684207)
chr6 (65-162)||(14669332-14669430)
chr6 (65-158)||(17719713-17719807)
chr6 (65-158)||(12591849-12591943)
chr6 (65-162)||(15361731-15361829)
chr6 (78-162)||(29667901-29667986)
chr6 (65-125)||(15690454-15690514)
chr6 (65-147)||(23264497-23264580)
chr6 (70-163)||(9631140-9631234)
chr6 (65-162)||(1942585-1942683)
chr6 (68-162)||(10070674-10070768)
chr6 (69-154)||(4485559-4485645)
chr6 (65-129)||(30481248-30481312)
chr6 (66-118)||(34374842-34374894)
chr6 (70-125)||(10935805-10935860)
chr6 (70-125)||(23904376-23904431)
chr6 (70-125)||(4591171-4591226)
chr6 (66-109)||(6673659-6673701)
[»] chr2 (11 HSPs)
chr2 (65-162)||(7718201-7718299)
chr2 (65-162)||(31342702-31342800)
chr2 (35-162)||(30266982-30267117)
chr2 (66-125)||(41573410-41573469)
chr2 (41-162)||(44920943-44921071)
chr2 (65-162)||(15513683-15513781)
chr2 (72-151)||(40016614-40016694)
chr2 (70-162)||(24479173-24479266)
chr2 (70-144)||(11017478-11017553)
chr2 (70-162)||(7702450-7702543)
chr2 (82-162)||(22966558-22966639)
[»] chr1 (16 HSPs)
chr1 (65-162)||(28636919-28637017)
chr1 (65-162)||(897471-897568)
chr1 (66-154)||(12189969-12190058)
chr1 (68-125)||(5911688-5911745)
chr1 (34-118)||(37097371-37097462)
chr1 (69-125)||(3399642-3399698)
chr1 (65-147)||(16222794-16222877)
chr1 (78-125)||(1843981-1844028)
chr1 (70-125)||(39368664-39368719)
chr1 (69-123)||(15214347-15214401)
chr1 (65-162)||(18308164-18308262)
chr1 (65-162)||(51758769-51758867)
chr1 (68-125)||(15204613-15204670)
chr1 (65-125)||(13208628-13208688)
chr1 (73-109)||(15193943-15193979)
chr1 (65-125)||(17112941-17113001)
[»] scaffold0684 (1 HSPs)
scaffold0684 (65-162)||(733-831)
[»] scaffold0069 (1 HSPs)
scaffold0069 (65-162)||(40684-40782)
[»] chr3 (18 HSPs)
chr3 (65-162)||(1627933-1628031)
chr3 (65-162)||(2550182-2550280)
chr3 (65-162)||(2943200-2943298)
chr3 (65-162)||(13846008-13846106)
chr3 (70-162)||(9633428-9633521)
chr3 (70-161)||(26707880-26707972)
chr3 (65-162)||(7407740-7407838)
chr3 (65-125)||(16457355-16457415)
chr3 (65-162)||(1654592-1654690)
chr3 (66-147)||(5498495-5498577)
chr3 (70-162)||(36035310-36035403)
chr3 (70-120)||(27259474-27259524)
chr3 (73-129)||(35083000-35083056)
chr3 (66-109)||(1613253-1613296)
chr3 (81-125)||(27713463-27713507)
chr3 (81-162)||(2179959-2180041)
chr3 (96-147)||(26735681-26735733)
chr3 (70-109)||(36035040-36035079)
[»] scaffold0576 (1 HSPs)
scaffold0576 (65-162)||(6715-6813)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-154)||(446277-446367)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 8e-78; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 8e-78
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 21539412 - 21539254
Alignment:
Q  8 gcccctagataaatctcgagaaagagacactattacaacaatgacatttagtaacacttgtaactaaatcaagaaaaatgttactgattaaatttagtaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  21539412 gcccctagataaatctcgagaaagagacactattacaacaatgacatttagtaatatttgtaactaaatcaaggaaaatgttactgattaaatttagtaa 21539313  T
Q  108 catttaaacaattgttagataagtccttgttactaaagagatttagttacattttttag 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21539312 catttaaacaattgttagataagtccttgttactaaagagatttagttacattttttag 21539254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 1152060 - 1152154
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttaca 158  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||| | ||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  1152060 ttgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagagttttagttaca 1152154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 1685036 - 1684942
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttaca 158  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  1685036 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttaca 1684942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 4904224 - 4904126
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| | |||  ||||||||||||| | ||||||||||||||    
T  4904224 ttgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgctttagttacatttt 4904126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 47066155 - 47066020
Alignment:
Q  35 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 127  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||| | ||||||||||||||||  | |||||||||||| |    
T  47066155 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 47066056  T
Q  128 -aagtccttgttactaaagagatttagttacatttt 162  Q
     ||| || |||||| |||||| ||||||||||||||    
T  47066055 aaagcccgtgttaccaaagagttttagttacatttt 47066020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 53300330 - 53300465
Alignment:
Q  35 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 127  Q
    ||||| ||||| |||||||||||||||||||||       ||| ||||||||||||||||||| | ||||||||||||||||  |||||||||||||| |    
T  53300330 cactactacaataatgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggt 53300429  T
Q  128 -aagtccttgttactaaagagatttagttacatttt 162  Q
     ||| || |||||| |||||| ||||||||||||||    
T  53300430 aaagcccgtgttaccaaagagttttagttacatttt 53300465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 4881153 - 4881055
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||  | ||||||||| | |||||| ||||||||||| | ||||||| ||||||    
T  4881153 ttgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaagtgctttagttgcatttt 4881055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 43600283 - 43600381
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| || | || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  43600283 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 43600381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 24559078 - 24559019
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  24559078 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttag 24559019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 48464056 - 48464116
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||| ||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||    
T  48464056 ttgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttag 48464116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 37751073 - 37750976
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||| |||||||||| |||||||||||| |||||| | ||||||||||   |||||||||||| ||| |  |||||||||  || ||||||||||||||    
T  37751073 ttgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagataaagccaatgttactaagaagctttagttacatttt 37750976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 7e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 17037522 - 17037657
Alignment:
Q  35 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 127  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |    
T  17037522 cactactacaataatgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 17037621  T
Q  128 -aagtccttgttactaaagagatttagttacatttt 162  Q
     |||||  ||||||||||||| ||||||||||||||    
T  17037622 aaagtcagtgttactaaagagttttagttacatttt 17037657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 30786283 - 30786381
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagt-ccttgttactaaagagatttagttacatttt 162  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||| | ||||||||||||| ||||||||| |||||||    
T  30786283 ttgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaagatttagtcacatttt 30786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 5079148 - 5079050
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  5079148 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 5079050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 12042261 - 12042201
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  12042261 ttgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttag 12042201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 19985013 - 19985109
Alignment:
Q  67 gtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||| || ||||||||| | ||||||  |||||||||||| ||||||||||||||    
T  19985013 gtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagagttttagttacatttt 19985109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 7410840 - 7410938
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  7410840 ttgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 7410938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 23679457 - 23679555
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||| | ||||||||| | ||||||  ||||||| |||||| |||| | ||||||||||||| ||||||||||||||    
T  23679457 ttgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacatttt 23679555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 23855354 - 23855256
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||| | ||||||||| | ||||||  ||||||| |||||| |||| | ||||||||||||| ||||||||||||||    
T  23855354 ttgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttttagttacatttt 23855256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 31069084 - 31068987
Alignment:
Q  34 acactattacaacaatgacatttagtaacactt-------gtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||| ||||| ||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  31069084 acactactacaataatgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttag 31068987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 9333645 - 9333585
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  9333645 ttgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 9333585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 10869458 - 10869535
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagag 147  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||| ||  ||| | |||||||||||    
T  10869458 actaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatccctcttactaaagag 10869535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 18191933 - 18191884
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaa 114  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  18191933 ttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttaa 18191884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 42076078 - 42076143
Alignment:
Q  80 gaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaa 144  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaa 42076143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 9354473 - 9354413
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||| | ||||||||||    
T  9354473 ttgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttag 9354413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 37233061 - 37233146
Alignment:
Q  78 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagata-agtccttgttactaaagagatttagttacatttt 162  Q
    |||||||| |||||| ||||||||||||||||||| | |||||||||| || ||||| |||||||||| || || ||| |||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacatttt 37233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 40402093 - 40402033
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||| ||||||| ||||||||||||||| |||||||||||| || ||| ||||||||||||    
T  40402093 ttgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttag 40402033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 31571052 - 31571090
Alignment:
Q  72 taaatcaagaaaaatgttactgattaaatttagtaacat 110  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  31571052 taaaacaagaaaaatgttactgattaaaattagtaacat 31571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 16411611 - 16411652
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatt 111  Q
    ||||||||| |||||||||||||||||| || ||||||||||    
T  16411611 actaaatcacgaaaaatgttactgattatatctagtaacatt 16411652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 5e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 5528721 - 5528857
Alignment:
Q  34 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttaga 126  Q
    |||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||    
T  5528721 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttaga 5528820  T
Q  127 t-aagtccttgttactaaagagatttagttacatttt 162  Q
    | |||||  ||||||||||||| ||||||||||||||    
T  5528821 taaagtctgtgttactaaagagttttagttacatttt 5528857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 19369994 - 19369896
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  19369994 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttacatttt 19369896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 17634555 - 17634457
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| ||| | ||| || |||||||||||| |||||||||||||||    
T  17634555 ttgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaatttagttacatttt 17634457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 19448464 - 19448562
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  19448464 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatatttt 19448562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 19532612 - 19532514
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  19532612 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttatatttt 19532514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 28249159 - 28249061
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  28249159 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 28249061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 45356196 - 45356098
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  45356196 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 45356098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 6801909 - 6801816
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||| |||||||||||| |||||||||||||||| || |||||||||||| | ||| || ||||||||||||| ||||||||||||||    
T  6801909 actaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagagttttagttacatttt 6801816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 25638823 - 25638921
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||  || ||||||||||| | ||||||||||||||    
T  25638823 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtgttttagttacatttt 25638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 31347365 - 31347444
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaa 143  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||| |||| |||||||||    
T  31347365 ttgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatcctgtgttactaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 18766933 - 18767031
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||| ||| | ||||||||| | |||| | ||||||||||||| | |||| | ||||||||||||| ||||||||||||||    
T  18766933 ttgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggtaaagtacgtgttactaaagagttttagttacatttt 18767031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 25637622 - 25637758
Alignment:
Q  34 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttaga 126  Q
    |||||| ||||| |||||||||||||||||||||       ||||||||| ||||||| ||||||| ||||||||||| |||| |  ||||||||||||     
T  25637622 acactactacaataatgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttagg 25637721  T
Q  127 t-aagtccttgttactaaagagatttagttacatttt 162  Q
    | ||| || ||||||||||||  ||||||||||||||    
T  25637722 taaagcccgtgttactaaagaattttagttacatttt 25637758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 6403609 - 6403669
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  6403609 ttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 6403669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 29345447 - 29345507
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||    
T  29345447 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttag 29345507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 5651024 - 5650931
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||| | ||  ||||||||| ||| || ||||||| ||||||    
T  5651024 actaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaagctttagttgcatttt 5650931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 29553645 - 29553705
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||||| | ||||||||||    
T  29553645 ttgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttag 29553705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 14997642 - 14997735
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||  | ||||||||| | ||  || ||||||||||||| ||||||||| ||||    
T  14997642 actaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagagctttagttacctttt 14997735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 31369186 - 31369092
Alignment:
Q  69 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 162  Q
    |||||||||| || |||||||||| ||||| |||||| |||||||||||| |||||  |||  | | ||||||||||||| || |||||||||||    
T  31369186 aactaaatcacgataaatgttactaattaagtttagtgacatttaaacaaatgttatgtaaagcttatgttactaaagagtttcagttacatttt 31369092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 6223434 - 6223511
Alignment:
Q  82 aaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttaca 158  Q
    |||| ||||||||||||||||||||||||||  | ||||||||| | |||  | ||||||||||||| ||||||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttaca 6223511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 9242568 - 9242470
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||| || |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  9242568 ttgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagagttttagttacatttt 9242470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 26608615 - 26608525
Alignment:
Q  73 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||||||||| ||||||| ||||||    
T  26608615 aaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagagctttagttgcatttt 26608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 26621175 - 26621077
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||  || ||||||||||||| ||||||||||||||    
T  26621175 ttgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagctttagttacatttt 26621077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 30089756 - 30089849
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||    
T  30089756 actaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagagctttagttacatttt 30089849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 26619187 - 26619091
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacattt 161  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||| |||| ||||||||||||  |||||||||||||    
T  26619187 ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaagaactttagttacattt 26619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 20277444 - 20277348
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatt 160  Q
    ||||||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||| | |||  | ||||||||||||| ||||||||||||    
T  20277444 ttgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagctttagttacatt 20277348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 4685487 - 4685389
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| || |||||||||||| | ||| || | ||||||||| | ||||||||||||||    
T  4685487 ttgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtgttttagttacatttt 4685389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 26225062 - 26224964
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| || ||||||| |||| | ||| |  ||||||||||||| ||||||| ||||||    
T  26225062 ttgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagttttagtttcatttt 26224964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 26205536 - 26205402
Alignment:
Q  35 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 127  Q
    ||||| ||||| ||||||||||||| |||||||       ||||||||||||||||||||||||| |||||||||||||||| || || ||||| ||| |    
T  26205536 cactactacaataatgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggt 26205437  T
Q  128 -aagtccttgttactaaagagatttagttacattt 161  Q
     |||    ||||||||||||| ||||||| |||||    
T  26205436 aaagctggtgttactaaagagttttagtttcattt 26205402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 10022140 - 10022238
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||  | |||||||||||| | |||  | ||||||||||||  ||||||||||||||    
T  10022140 ttgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaagaattttagttacatttt 10022238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 3374325 - 3374374
Alignment:
Q  73 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgt 122  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  3374325 aaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgt 3374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 16170287 - 16170347
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||| ||||||  |||| ||||||| |||||||||||||||| |||||||||||||||    
T  16170287 ttgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttag 16170347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 27135958 - 27136028
Alignment:
Q  78 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagag 147  Q
    ||||||||||||| |||||| || || |||||||| ||||||||||||||||  ||| |||||||||||||    
T  27135958 aagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagag 27136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 8241614 - 8241677
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa 129  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||| |||| |||| |||||||||||    
T  8241614 ttgtaactaaatgaagaaaa-tgttactgattgaatttaataatatttgaacagttgttagataa 8241677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 11936851 - 11936753
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||    
T  11936851 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttt 11936753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 11948831 - 11948733
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||    
T  11948831 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttt 11948733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 16734821 - 16734919
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  16734821 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 16734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 6684110 - 6684207
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| |  ||| |||||||| | |||||| ||||||||||||| ||||||||||||||    
T  6684110 ttgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaagtccatgttactaaagagttttagttacatttt 6684207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 14669430 - 14669332
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||| | |||| |  || ||||||||| | |||||| ||||||||||||| ||||||||||||||    
T  14669430 ttgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagttttagttacatttt 14669332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 17719807 - 17719713
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttaca 158  Q
    |||||||||||||||||||||||||||| ||||| ||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  17719807 ttgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttttagttaca 17719713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 12591849 - 12591943
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttaca 158  Q
    |||||||||||||||||||||||||| | |||||||||||||||  |  |||||||||||| | ||| || ||||||||||||| ||||||||||    
T  12591849 ttgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttttagttaca 12591943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 15361731 - 15361829
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| |  ||||||||||  | ||||||||||||||    
T  15361731 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacatttt 15361829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 29667986 - 29667901
Alignment:
Q  78 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 162  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| |||  | | ||||| |||||||||||||| |||||||    
T  29667986 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagcttgtgttattaaagagatttagtaacatttt 29667901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 15690454 - 15690514
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||    
T  15690454 ttgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttag 15690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 23264580 - 23264497
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 147  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||| | || ||| |||||||||||||    
T  23264580 ttgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaagag 23264497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 9631234 - 9631140
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagata-agtccttgttactaaagagatttagttacattttt 163  Q
    ||||||||||||| || |||||| | ||||||||||||||||| ||||||||||||  | || || |||||||| |||| |||||||||||||||    
T  9631234 actaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttactatagagttttagttacattttt 9631140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 1942585 - 1942683
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcc-ttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||| | |||||| ||| |||  || |||||| |||| |  ||||||||||||||    
T  1942585 ttgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaacctttgttattaaatatctttagttacatttt 1942683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 10070674 - 10070768
Alignment:
Q  68 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||| |||| ||||||| |||||||||| ||||| | ||| |||||||| |  |||||| |||||||||| || ||||||||||||||    
T  10070674 taactaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgtaaagtccgtgttactaaa-agttttagttacatttt 10070768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 4485645 - 4485559
Alignment:
Q  69 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagt 154  Q
    |||||||||||| |||||| |||| |||||||||||||| |||| || ||||||||| | |||||| ||||| |||| || ||||||    
T  4485645 aactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaagtccgtgttattaaatagttttagt 4485559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 30481312 - 30481248
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa 129  Q
    |||| |||||||||||||||||||| || ||||||| |||||||| || ||||| | ||||||||    
T  30481312 ttgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataa 30481248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 34374842 - 34374894
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaa 118  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  34374842 tgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaa 34374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 10935860 - 10935805
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||||| ||||||||||||| |||| ||  |||||||||| ||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttag 10935805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 23904431 - 23904376
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||| |||||||| |||||| | | ||||||||||||||| ||||||||||||    
T  23904431 actaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttag 23904376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 4591171 - 4591226
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||| ||||||| | | |||| |||  |||||||||||    
T  4591171 actaaatcaagaaaaatgttaccgattaaaatcaataacctttgtacaattgttag 4591226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 6673701 - 6673659
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaaca 109  Q
    ||||||||||||||||||||||||||| |  |||||||||||||    
T  6673701 tgtaactaaatcaagaaaaatgttact-aaaaaatttagtaaca 6673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 7718201 - 7718299
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||  | |||||||||||||| |||||| ||||||||||||| |||| |||||||||    
T  7718201 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagagttttaattacatttt 7718299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 31342800 - 31342702
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||| ||| || ||||||||||| | ||||||||||||||    
T  31342800 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacatttt 31342702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 30266982 - 30267117
Alignment:
Q  35 cactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat 127  Q
    ||||| ||||| |||||||||||||||||||||       ||||||||||||||||||||||| | ||||||||||||||||  | |||||||||||| |    
T  30266982 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 30267081  T
Q  128 -aagtccttgttactaaagagatttagttacatttt 162  Q
     ||| || |||||| |||||| ||||||||||||||    
T  30267082 aaagcccgtgttaccaaagagttttagttacatttt 30267117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 41573410 - 41573469
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  41573410 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttag 41573469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 44920943 - 44921071
Alignment:
Q  41 tacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtc 132  Q
    ||||| |||||||||||||||||||||       |||||||||||| |||||||||||| ||||||||||||||||  |||||||||||||| | |||      
T  44920943 tacaataatgacatttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagct 44921041  T
Q  133 cttgttactaaagagatttagttacatttt 162  Q
    | ||||||||||||| ||||||||||||||    
T  44921042 cgtgttactaaagagttttagttacatttt 44921071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 15513683 - 15513781
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||| |||||||||||||||||||||  |||||||| |||||| || |||||||||||| | |||  | |||||||||| |||||||||||||||||    
T  15513683 ttgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagatttagttacatttt 15513781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 40016614 - 40016694
Alignment:
Q  72 taaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagattt 151  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||||||||| | ||| || | |||||||||||||||    
T  40016614 taaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagagattt 40016694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 24479173 - 24479266
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||| || ||||||| ||||||||||||||||||| ||||||| |||| | |||  | ||||||||||||| |||||||| |||||    
T  24479173 actaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaagagctttagttatatttt 24479266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 11017478 - 11017553
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaa 144  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| | |||||||||| | |||||| ||||||||||    
T  11017478 actaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaa 11017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 7702450 - 7702543
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||||| || |||||||||| | |||||| ||||||||||||  ||||||||||| | ||| || | ||||||||||| ||||||||||||||    
T  7702450 actaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagagctttagttacatttt 7702543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 22966558 - 22966639
Alignment:
Q  82 aaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    ||||| ||||| || ||||||||| ||||||||||||||||||| | ||| || ||||||||||||  ||||||||||||||    
T  22966558 aaaatattactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagacctttagttacatttt 22966639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 28636919 - 28637017
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||| | |||||  |||| |||||||||||||||||||||||    
T  28636919 ttgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagagatttagttacatttt 28637017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 897471 - 897568
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagagatttagttacatttt 162  Q
    |||| ||||||| |||||||||||| || |||||||||||||||| || |||||||||||| ||||| | ||||||||||||| | ||||||||||||    
T  897471 ttgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaagttcatgttactaaagagctatagttacatttt 897568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 12189969 - 12190058
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagt 154  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| | ||| || ||||||||||||| ||||||    
T  12189969 tgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaagagttttagt 12190058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 5911745 - 5911688
Alignment:
Q  68 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5911745 taactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttag 5911688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 37097462 - 37097371
Alignment:
Q  34 acactattacaacaatgacatttagtaacacttg-------taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaa 118  Q
    |||||| ||||| |||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  37097462 acactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 3399642 - 3399698
Alignment:
Q  69 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttag 3399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 16222794 - 16222877
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 147  Q
    |||||||||||||||||||||||||||| || ||||||||||||| || || ||||||||| | ||| || |||||||||||||    
T  16222794 ttgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaagag 16222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 1843981 - 1844028
Alignment:
Q  78 aagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttag 1844028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 39368719 - 39368664
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||    
T  39368719 actaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttag 39368664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 15214347 - 15214401
Alignment:
Q  69 aactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtt 123  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||    
T  15214347 aactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgtt 15214401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 18308164 - 18308262
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 162  Q
    |||| |||||||||||||||||||||| ||||| | ||| ||||||||  ||||||||||| |||  ||| ||||||| ||| | ||||||||||||||    
T  18308164 ttgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaagggctttagttacatttt 18308262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 51758769 - 51758867
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| |  ||||||| |||| | |||  | | ||||||||||| ||||||||||||||    
T  51758769 ttgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagagttttagttacatttt 51758867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 15204613 - 15204670
Alignment:
Q  68 taactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||| || | |||||||||||||| || ||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttag 15204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 13208628 - 13208688
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| || || ||| ||||||||    
T  13208628 ttgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttag 13208688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 15193943 - 15193979
Alignment:
Q  73 aaatcaagaaaaatgttactgattaaatttagtaaca 109  Q
    |||||||||||||||||||| |||||||||| |||||    
T  15193943 aaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 17112941 - 17113001
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||| |||||||||||||||||  ||||  |||||||| |||||| || ||||||||||||    
T  17112941 ttgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttag 17113001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 55; Significance: 7e-23; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 831 - 733
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||| ||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  831 ttgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacatttt 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 55; Significance: 7e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 40782 - 40684
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||| ||||||| ||||||||| | |||| |  |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  40782 ttgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttttagttacatttt 40684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 7e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 1628031 - 1627933
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtt-agataagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||| ||  |||||| |||||| |||||| ||||||||||||||    
T  1628031 ttgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagagttttagttacatttt 1627933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 2550182 - 2550280
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| |||  ||| ||||||||||| | ||||||||||||||    
T  2550182 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtgttttagttacatttt 2550280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 2943298 - 2943200
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagttacatttt 162  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||| || ||||||||||| | ||||||||||||||    
T  2943298 ttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagttacatttt 2943200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 13846008 - 13846106
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  13846008 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 13846106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 9633521 - 9633428
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||| | |||||||||||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||||| ||||||||||||||    
T  9633521 actaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagagttttagttacatttt 9633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 26707880 - 26707972
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattt 161  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||  ||||||||||||| || ||| ||||||    
T  26707880 actaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggttcagtaacattt 26707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 7407838 - 7407740
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||| | ||| || ||||||||||| | ||||||||||||||    
T  7407838 ttgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtgttttagttacatttt 7407740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 16457415 - 16457355
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  16457415 ttgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttag 16457355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 1654592 - 1654690
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||  |||  ||| ||||| ||||| | ||||||||||||||    
T  1654592 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtgttttagttacatttt 1654690  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 5498495 - 5498577
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcct-tgttactaaagag 147  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||| |||  ||| |||||||||||||    
T  5498495 tgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaagag 5498577  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 36035310 - 36035403
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||  |||| |||||||||||||||| ||  ||||||||||| | |||  | ||||||||||||| ||||||||||||||    
T  36035310 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacatttt 36035403  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 27259524 - 27259474
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaatt 120  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  27259524 actaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 35083000 - 35083056
Alignment:
Q  73 aaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagataa 129  Q
    |||||||||||||||||| | | |||||||||||| |||| ||||||||||||||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataa 35083056  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 1613296 - 1613253
Alignment:
Q  66 tgtaactaaatcaagaaaaatgttactgattaaatttagtaaca 109  Q
    ||||||||||||||||||||||||||| | ||||||||||||||    
T  1613296 tgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 1613253  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 27713507 - 27713463
Alignment:
Q  81 aaaaatgttactgattaaatttagtaacatttaaacaattgttag 125  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||    
T  27713507 aaaaaagttactaattaaatttagtaacatttaaataattgttag 27713463  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 2179959 - 2180041
Alignment:
Q  81 aaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||| ||||||||||||| | ||||| ||||||| || | | || ||| ||||||||||||| |||||||| |||||    
T  2179959 aaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaagagctttagttatatttt 2180041  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 26735681 - 26735733
Alignment:
Q  96 taaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagag 147  Q
    ||||||||||||||||| |||||||||||| | || ||| |||||||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagag 26735733  T

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Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 36035040 - 36035079
Alignment:
Q  70 actaaatcaagaaaaatgttactgattaaatttagtaaca 109  Q
    |||||||||||||||||  |||| ||||||||||||||||    
T  36035040 actaaatcaagaaaaataatactaattaaatttagtaaca 36035079  T

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Target: scaffold0576 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 6715 - 6813
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacatttt 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||| | ||| |  ||||||||||  | ||||||||||||||    
T  6715 ttgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttttagttacatttt 6813  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 446367 - 446277
Alignment:
Q  65 ttgtaactaaatcaagaaaaatgttactgattaaatttagtaacatttaaacaattgtta-gataagtccttgttactaaagagatttagt 154  Q
    ||||||||||||||   ||| ||||||  ||||||||| ||||||||| ||||||||||| || |||||| | ||||||||||| ||||||    
T  446367 ttgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtccatattactaaagagctttagt 446277  T

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